Raf promotes dimerization of the Ras G-domain with increased allosteric connections

Proc Natl Acad Sci U S A. 2021 Mar 9;118(10):e2015648118. doi: 10.1073/pnas.2015648118.

Abstract

Ras dimerization is critical for Raf activation. Here we show that the Ras binding domain of Raf (Raf-RBD) induces robust Ras dimerization at low surface densities on supported lipid bilayers and, to a lesser extent, in solution as observed by size exclusion chromatography and confirmed by SAXS. Community network analysis based on molecular dynamics simulations shows robust allosteric connections linking the two Raf-RBD D113 residues located in the Galectin scaffold protein binding site of each Raf-RBD molecule and 85 Å apart on opposite ends of the dimer complex. Our results suggest that Raf-RBD binding and Ras dimerization are concerted events that lead to a high-affinity signaling complex at the membrane that we propose is an essential unit in the macromolecular assembly of higher order Ras/Raf/Galectin complexes important for signaling through the Ras/Raf/MEK/ERK pathway.

Keywords: Raf; Ras; allosteric connections; dimerization.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Galectins / chemistry
  • Galectins / genetics
  • Galectins / metabolism
  • Humans
  • Molecular Dynamics Simulation*
  • Protein Domains
  • Proto-Oncogene Proteins p21(ras) / chemistry*
  • Proto-Oncogene Proteins p21(ras) / genetics
  • Proto-Oncogene Proteins p21(ras) / metabolism
  • raf Kinases / chemistry*
  • raf Kinases / genetics
  • raf Kinases / metabolism

Substances

  • Galectins
  • KRAS protein, human
  • raf Kinases
  • HRAS protein, human
  • Proto-Oncogene Proteins p21(ras)