Expression of a novel type of KMT2A/EPS15 fusion transcript in FLT3 mutation-positive B-lymphoblastic leukemia with t(1;11)(p32;q23)

Cancer Genet. 2021 Jun:254-255:92-97. doi: 10.1016/j.cancergen.2021.02.006. Epub 2021 Feb 13.

Abstract

The t(1;11)(p32;q23) translocation is a rare but recurrent cytogenetic aberration in acute myeloid leukemia (AML) and B-cell acute lymphoblastic leukemia (B-ALL). This translocation was initially shown to form a fusion gene between KMT2A exon 8 at 11q23 and EPS15 exon 2 at 1p32 in AML. Activating mutations of FLT3 are frequently found in AML but are very rare in ALL. Here, we describe a 75-year-old woman who was diagnosed with B-ALL since her bone marrow was made up of 98.2% lymphoblasts. These blasts were positive for CD19, CD22, CD79a, CD13, and CD33 but negative for CD10 and myeloperoxidase. The karyotype by G-banding and spectral karyotyping was 46,XX,t(1;11)(p32;q23). Expression of KMT2A/EPS15 and reciprocal EPS15/KMT2A fusion transcripts were shown: KMT2A exon 8 was in-frame fused to EPS15 exon 12, indicating that this fusion transcript was a novel type. Considering three reported B-ALL cases, EPS15 breakpoints were markedly different between AML (exon 2) and B-ALL (exons 10-12). Furthermore, an uncommon type of FLT3 mutation in the juxtamembrane domain was detected: in-frame 4-bp deletion and 10-bp insertion. Accordingly, our results indicate that the novel type of KMT2A/EPS15 fusion transcript and FLT3 mutation may cooperate in the pathogenesis of adult B-ALL as class II and class I mutations, respectively.

Keywords: B-lymphoblastic leukemia; Chromosomal translocation; FLT3 mutation; KMT2A/EPS15.

Publication types

  • Case Reports

MeSH terms

  • Aged
  • Amino Acid Sequence
  • Base Sequence
  • Bone Marrow Cells / pathology
  • Cell Shape
  • Chromosomes, Human, Pair 1 / genetics*
  • Chromosomes, Human, Pair 11 / genetics*
  • Fatal Outcome
  • Female
  • Humans
  • Mutation / genetics*
  • Oncogene Proteins, Fusion / genetics*
  • Oncogene Proteins, Fusion / metabolism
  • Precursor B-Cell Lymphoblastic Leukemia-Lymphoma / genetics*
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Translocation, Genetic*
  • fms-Like Tyrosine Kinase 3 / chemistry
  • fms-Like Tyrosine Kinase 3 / genetics*

Substances

  • Oncogene Proteins, Fusion
  • RNA, Messenger
  • FLT3 protein, human
  • fms-Like Tyrosine Kinase 3