Identification of Vicia Species Native to South Korea Using Molecular and Morphological Characteristics

Seahee Han; Raveendar Sebastin; XiaoHan Wang; Kyung Jun Lee; Gyu-Taek Cho; Do Yoon Hyun; Jong-Wook Chung

doi:10.3389/fpls.2021.608559

Identification of Vicia Species Native to South Korea Using Molecular and Morphological Characteristics

Front Plant Sci. 2021 Feb 9:12:608559. doi: 10.3389/fpls.2021.608559. eCollection 2021.

Authors

Seahee Han¹, Raveendar Sebastin¹, XiaoHan Wang¹, Kyung Jun Lee¹, Gyu-Taek Cho¹, Do Yoon Hyun¹, Jong-Wook Chung²

Affiliations

¹ National Agrobiodiversity Center, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju, South Korea.
² Department of Industrial Plant Science and Technology, Chungbuk National University, Cheongju, South Korea.

Abstract

Recently, within the Fabaceae family, the Vicia genus has been recognized for its vital role in sustainable agriculture. Vicia species are economically important grain and forage crops. However, the presence of complex morphological characteristics makes identification and recognition of native species difficult. In this study, the possibility of using DNA barcoding regions (ITS2, matK, and rbcL) to distinguish among 19 Vicia taxa (59 accessions) found in South Korea was evaluated. The sequence alignment analysis revealed considerable nucleotide diversity (π) between the loci, in which ITS2 showed the highest mean interspecific distance, whereas there was no intraspecific variability among the barcode regions in 12 of the 19 taxa. Phylogenetic analysis of combined barcoding regions revealed well-resolved phylogeny with the highest species level discrimination. Combinations of barcode loci were also used in classification at the subgenera and section levels. The results revealed that the combined barcoding regions can be used effectively to differentiate the following species: Vicia angustifolia var. segetilis, Vicia bungei, Vicia villosa, Vicia cracca, Vicia dasycarpa, Vicia hirsuta, Vicia tetrasperma, Vicia amurensis, Vicia hirticalycina, and Vicia chosenensis. However, it is difficult to differentiate the species of Vicia unijuga, Vicia unijuga var. kaussanensis, Vicia linearifolia, Vicia unijuga f. angustifolia, Vicia nipponica, Vicia amoena, Vicia venosa var. cuspidata, Vicia pseudo-orobus, and Vicia japonica with the tested barcode regions. These species come under sect. Vicilla and are found to be closely related or species that have recently undergone speciation; thus, it has limitation to distinguish with recommended barcodes. Hence, to differentiate the unclassified species, 39 morphological characteristics were investigated, in which 16 useful characteristics were selected for efficient classification. Finally, the 16 selected morphological useful traits efficiently differentiated all the Vicia species. In conclusion, a combination of barcoding loci together with morphological characteristics of this study efficiently discriminated all the Korean Vicia species.

Keywords: DNA barcoding; Vicia spp.; morphology; phylogeny; species discrimination.