Genomic Characterization of hlyF-positive Shiga Toxin-Producing Escherichia coli, Italy and the Netherlands, 2000-2019

Emerg Infect Dis. 2021 Mar;27(3):853-861. doi: 10.3201/eid2703.203110.

Abstract

Shiga toxin-producing Escherichia coli (STEC) O80:H2 has emerged in Europe as a cause of hemolytic uremic syndrome associated with bacteremia. STEC O80:H2 harbors the mosaic plasmid pR444_A, which combines several virulence genes, including hlyF and antimicrobial resistance genes. pR444_A is found in some extraintestinal pathogenic E. coli (ExPEC) strains. We identified and characterized 53 STEC strains with ExPEC-associated virulence genes isolated in Italy and the Netherlands during 2000-2019. The isolates belong to 2 major populations: 1 belongs to sequence type 301 and harbors diverse stx2 subtypes, the intimin variant eae-ξ, and pO157-like and pR444_A plasmids; 1 consists of strains belonging to various sequence types, some of which lack the pO157 plasmid, the locus of enterocyte effacement, and the antimicrobial resistance-encoding region. Our results showed that STEC strains harboring ExPEC-associated virulence genes can include multiple serotypes and that the pR444_A plasmid can be acquired and mobilized by STEC strains.

Keywords: Escherichia coli; ExPEC; Italy; STEC; Shiga toxin–producing Escherichia coli; antimicrobial resistance; bacteria; bacterial zoonoses; enteric infections; extraintestinal pathogenic E. coli; food safety; foodborne disease; hemolytic uremic syndrome; hlyF; phylogenesis; the Netherlands; whole-genome sequencing; zoonoses.

MeSH terms

  • Escherichia coli Infections*
  • Escherichia coli Proteins*
  • Europe
  • Genomics
  • Humans
  • Italy
  • Netherlands
  • Shiga-Toxigenic Escherichia coli*
  • Virulence Factors

Substances

  • Escherichia coli Proteins
  • Virulence Factors