A novel bicyclic 2,4-diaminopyrimidine inhibitor of Streptococcus suis dihydrofolate reductase

PeerJ. 2021 Feb 3:9:e10743. doi: 10.7717/peerj.10743. eCollection 2021.

Abstract

Streptococcus suis is a Gram-positive bacterial pathogen of pigs and an emerging zoonotic pathogen. It has become increasingly resistant to multiple classes of antibiotics. New drug candidates and knowledge of their targets are needed to combat antibiotic-resistant S. suis. In this study, the open-source Pathogen Box compound library was screened. Thirty hits that effectively inhibited S. suis growth at 10 µM were identified. Among the most potent hits, MMV675968 (a diaminoquinazoline analog) was shown to target S. suis dihydrofolate reductase (SsDHFR) via (1) growth inhibition of an E. coli surrogate whose growth is dependent on exogenously expressed SsDHFR and (2) inhibition of in vitro SsDHFR activity. Thymidine supplement is able to reverse growth inhibition by MMV675968 in both E. coli surrogate and S. suis, indicating that a thymidine-related pathway is a major target of MMV675968. Comparison of MMV675968 with seven DHFR inhibitors representing different core structures revealed that bicyclic 2,4-diaminopyrimidines with long and flexible side chains are highly effective in inhibiting SsDHFR and S. suis growth. MMV675968 and related compounds thus may serve as starting points for developing antibiotics against drug resistant S. suis.

Keywords: Antibiotics; Antifolate; Diaminopyrimidine; Dihydrofolate reductase; Drug discovery; Drug resistant; Growth inhibition; Pathogen Box; Screening; Streptococcus suis.

Grants and funding

This research received no specific grant from any funding agency in the public, commercial, or not-for-profit sectors. Ubolsree Leartsakulpanich was supported by a research grant (P16-52034) from National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA). Suganya Yongkiettrakul was supported by a RI research grant (P16-51873) from Food Biotechnology Research Unit, BIOTEC. Potjanee Srimanote was supported by Thammasat University Fiscal year budget and Thailand Research Fund (TRF). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.