RPA-mediated recruitment of Bre1 couples histone H2B ubiquitination to DNA replication and repair

Proc Natl Acad Sci U S A. 2021 Feb 23;118(8):e2017497118. doi: 10.1073/pnas.2017497118.

Abstract

The ubiquitin E3 ligase Bre1-mediated H2B monoubiquitination (H2Bub) is essential for proper DNA replication and repair in eukaryotes. Deficiency in H2Bub causes genome instability and cancer. How the Bre1-H2Bub pathway is evoked in response to DNA replication or repair remains unknown. Here, we identify that the single-stranded DNA (ssDNA) binding factor RPA acts as a key mediator that couples Bre1-mediated H2Bub to DNA replication and repair in yeast. We found that RPA interacts with Bre1 in vitro and in vivo, and this interaction is stimulated by ssDNA. This association ensures the recruitment of Bre1 to replication forks or DNA breaks but does not affect its E3 ligase activity. Disruption of the interaction abolishes the local enrichment of H2Bub, resulting in impaired DNA replication, response to replication stress, and repair by homologous recombination, accompanied by increased genome instability and DNA damage sensitivity. Notably, we found that RNF20, the human homolog of Bre1, interacts with RPA70 in a conserved mode. Thus, RPA functions as a master regulator for the spatial-temporal control of H2Bub chromatin landscape during DNA replication and recombination, extending the versatile roles of RPA in guarding genome stability.

Keywords: Bre1; DNA replication; H2B ubiquitination; RPA; homologous recombination.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA Repair*
  • DNA Replication*
  • DNA, Single-Stranded
  • Histones / genetics
  • Histones / metabolism*
  • Homologous Recombination
  • Methyl Methanesulfonate / toxicity
  • Protein Interaction Domains and Motifs / genetics
  • Replication Protein A / genetics
  • Replication Protein A / metabolism*
  • Saccharomyces cerevisiae / drug effects
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / metabolism
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism*
  • Ubiquitin-Protein Ligases / genetics
  • Ubiquitin-Protein Ligases / metabolism
  • Ubiquitination

Substances

  • Bre1 protein, S cerevisiae
  • DNA, Single-Stranded
  • Histones
  • RFA1 protein, S cerevisiae
  • Replication Protein A
  • Saccharomyces cerevisiae Proteins
  • Methyl Methanesulfonate
  • RNF20 protein, human
  • Ubiquitin-Protein Ligases