Identification of rice (Oryza sativa L.) genes involved in sheath blight resistance via a genome-wide association study

Plant Biotechnol J. 2021 Aug;19(8):1553-1566. doi: 10.1111/pbi.13569. Epub 2021 Mar 18.

Abstract

Rice sheath blight (RSB) is an economically significant disease affecting rice yield worldwide. Genetic resistance to RSB is associated with multiple minor genes, with each providing a minor phenotypic effect, but the underlying dominant resistance genes remain unknown. A genome-wide association study (GWAS) of 259 diverse rice varieties, with genotypes based on a single nucleotide polymorphism (SNP) and haplotype, was conducted to assess their sheath blight reactions at three developmental stages (seedlings, tillering and booting). A total of 653 genes were correlated with sheath blight resistance, of which the disease resistance protein RPM1 (OsRSR1) and protein kinase domain-containing protein (OsRLCK5) were validated by overexpression and knockdown assays. We further found that the coiled-coil (CC) domain of OsRSR1 (OsRSR1-CC) and full-length OsRLCK5 interacted with serine hydroxymethyltransferase 1 (OsSHM1) and glutaredoxin (OsGRX20), respectively. It was found that OsSHM1, which has a role in the reactive oxygen species (ROS) burst, and OsGRX20 enhanced the antioxidation ability of plants. A regulation model of the new RSB resistance though the glutathione (GSH)-ascorbic acid (AsA) antioxidant system was therefore revealed. These results enhance our understanding of RSB resistance mechanisms and provide better gene resources for the breeding of disease resistance in rice.

Keywords: Rhizoctonia solani AG1-IA; genome-wide association study; glutathione-ascorbic acid antioxidant system; resistance genes; rice sheath blight.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Disease Resistance / genetics*
  • Genetic Association Studies
  • Oryza* / genetics
  • Plant Breeding
  • Plant Diseases / genetics*
  • Plant Diseases / microbiology
  • Plant Proteins / genetics
  • Rhizoctonia / pathogenicity

Substances

  • Plant Proteins