The first non-helical Aib-containing hexapeptide: The crystal structure of Z-Gly-Aib-Gly-Aib-Gly-Aib-OtBu

J Pept Sci. 2021 May;27(5):e3307. doi: 10.1002/psc.3307. Epub 2021 Feb 17.

Abstract

The synthetic peptide Z-Gly-Aib-Gly-Aib-Gly-Aib-OtBu was crystallized from a mixture of ethyl acetate and n-hexane. The crystals belong to the centrosymmetric space group Pbca. There are three molecules in the asymmetric unit. The three molecules differ mainly in the Z-group conformation. The first Gly residue adopts a fully extended conformation, residues 2 and 3 lie in the left-handed helical region, residues 4 and 5 in the right-handed helical region, and residue 6 again in the left-handed helical region of the Ramachandran plot. There are only two of four possible intramolecular hydrogen bonds formed, namely, between Aib4 and Gly1 forming a β-turn of type III' and between Aib6 and Gly3 forming a β-turn of type I. The inverted molecules (by space group symmetry) lie in the regions with opposite handedness and form β-turns of type III and I'. In contrast to all known long synthetic and naturally occurring Aib-containing peptides that fold as 310 - or α-helix, Z-(Gly-Aib)3 -OtBu folds in a quite flat structure from which only the protecting groups bulge out.

Keywords: Gly-Aib peptide; achiral peptide; centrosymmetry; crystal structure; non-helical Aib-peptide; α-aminoisobutyric acid.

MeSH terms

  • Aminoisobutyric Acids / chemistry*
  • Crystallography, X-Ray
  • Models, Molecular
  • Oligopeptides / chemical synthesis
  • Oligopeptides / chemistry*

Substances

  • Aminoisobutyric Acids
  • Oligopeptides