Genetic variation analyses indicate conserved SARS-CoV-2-host interaction and varied genetic adaptation in immune response factors in modern human evolution

Dev Growth Differ. 2021 Apr;63(3):219-227. doi: 10.1111/dgd.12717. Epub 2021 Mar 21.

Abstract

Coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is a pandemic as of early 2020. Upon infection, SARS-CoV-2 attaches to its receptor, that is, angiotensin-converting enzyme 2 (ACE2), on the surface of host cells and is then internalized into host cells via enzymatic machineries. This subsequently stimulates immune response factors. Since the host immune response and severity of COVID-19 vary among individuals, genetic risk factors for severe COVID-19 cases have been investigated. Our research group recently conducted a survey of genetic variants among SARS-CoV-2-interacting molecules across populations, noting near absence of difference in allele frequency spectrum between populations in these genes. Recent genome-wide association studies have identified genetic risk factors for severe COVID-19 cases in a segment of chromosome 3 that involves six genes encoding three immune-regulatory chemokine receptors and another three molecules. The risk haplotype seemed to be inherited from Neanderthals, suggesting genetic adaptation against pathogens in modern human evolution. Therefore, SARS-CoV-2 uses highly conserved molecules as its virion interaction, whereas its immune response appears to be genetically biased in individuals to some extent. We herein review the molecular process of SARS-CoV-2 infection as well as our further survey of genetic variants of its related immune effectors. We also discuss aspects of modern human evolution.

Keywords: COVID-19; genetic variant; human evolution.

Publication types

  • Review

MeSH terms

  • Adaptive Immunity* / genetics
  • Adaptive Immunity* / immunology
  • Animals
  • COVID-19* / epidemiology
  • COVID-19* / genetics
  • COVID-19* / immunology
  • Conserved Sequence
  • Evolution, Molecular*
  • Genetic Variation*
  • Genome-Wide Association Study
  • Host Adaptation / genetics
  • Host Adaptation / immunology
  • Host-Pathogen Interactions* / genetics
  • Host-Pathogen Interactions* / immunology
  • Humans
  • Pandemics
  • SARS-CoV-2 / genetics*
  • SARS-CoV-2 / immunology
  • Sequence Analysis, RNA