Design, synthesis and cell imaging of a simple peptide-based probe for the selective detection of RNA

Chem Commun (Camb). 2021 Mar 14;57(21):2653-2656. doi: 10.1039/d0cc06508k. Epub 2021 Feb 15.

Abstract

Here we present a novel peptide-based fluorescent "turn-on" molecule P1 for detecting RNA, in a double or single strand, AU-rich or CG-rich. Both computational and experimental studies indicate that the detection efficiency depends on the binding affinity of P1 and conformational changes. P1 could be applied for cell imaging without any additional transfection vectors. Selective detection of RNA in cells was determined by RNase digestion. Successful application of P1 for RNA imaging in cell mitosis reveals that it may have broad applications in research, biotechnology and medical science.

MeSH terms

  • Dansyl Compounds / chemical synthesis
  • Dansyl Compounds / chemistry*
  • Dansyl Compounds / metabolism
  • Fluorescent Dyes / chemical synthesis
  • Fluorescent Dyes / chemistry*
  • Fluorescent Dyes / metabolism
  • HeLa Cells
  • Humans
  • Molecular Docking Simulation
  • Molecular Dynamics Simulation
  • Peptides / chemical synthesis
  • Peptides / chemistry*
  • Peptides / metabolism
  • RNA / analysis*
  • RNA / metabolism
  • Spectrometry, Fluorescence

Substances

  • Dansyl Compounds
  • Fluorescent Dyes
  • Peptides
  • RNA