Structure- and mechanism-guided design of single fluorescent protein-based biosensors

Nat Chem Biol. 2021 May;17(5):509-518. doi: 10.1038/s41589-020-00718-x. Epub 2021 Feb 8.

Abstract

Intensiometric genetically encoded biosensors, based on allosteric modulation of the fluorescence of a single fluorescent protein, are powerful tools for enabling imaging of neural activities and other cellular biochemical events. The archetypical example of such biosensors is the GCaMP series of Ca2+ biosensors, which have been steadily improved over the past two decades and are now indispensable tools for neuroscience. However, no other biosensors have reached levels of performance, or had revolutionary impacts within specific disciplines, comparable to that of the Ca2+ biosensors. Of the many reasons why this has been the case, a critical one has been a general black-box view of biosensor structure and mechanism. With this Perspective, we aim to summarize what is known about biosensor structure and mechanisms and, based on this foundation, provide guidelines to accelerate the development of a broader range of biosensors with performance comparable to that of the GCaMP series.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Allosteric Regulation
  • Amino Acid Sequence
  • Animals
  • Biosensing Techniques / instrumentation
  • Biosensing Techniques / methods*
  • Calcium / metabolism*
  • Calcium Signaling
  • Calmodulin / chemistry*
  • Calmodulin / genetics
  • Calmodulin / metabolism
  • Fluorescence Resonance Energy Transfer / methods*
  • Gene Expression
  • Genes, Reporter
  • Green Fluorescent Proteins / chemistry*
  • Green Fluorescent Proteins / genetics
  • Green Fluorescent Proteins / metabolism
  • Humans
  • Models, Molecular
  • Neurons / cytology
  • Neurons / physiology
  • Oligopeptides / chemical synthesis
  • Oligopeptides / metabolism
  • Recombinant Fusion Proteins / chemistry
  • Recombinant Fusion Proteins / genetics
  • Synaptic Transmission / physiology
  • Zinc Fingers*

Substances

  • Calmodulin
  • Oligopeptides
  • Recombinant Fusion Proteins
  • Green Fluorescent Proteins
  • Calcium

Grants and funding