Structures of active-state orexin receptor 2 rationalize peptide and small-molecule agonist recognition and receptor activation

Nat Commun. 2021 Feb 5;12(1):815. doi: 10.1038/s41467-021-21087-6.

Abstract

Narcolepsy type 1 (NT1) is a chronic neurological disorder that impairs the brain's ability to control sleep-wake cycles. Current therapies are limited to the management of symptoms with modest effectiveness and substantial adverse effects. Agonists of the orexin receptor 2 (OX2R) have shown promise as novel therapeutics that directly target the pathophysiology of the disease. However, identification of drug-like OX2R agonists has proven difficult. Here we report cryo-electron microscopy structures of active-state OX2R bound to an endogenous peptide agonist and a small-molecule agonist. The extended carboxy-terminal segment of the peptide reaches into the core of OX2R to stabilize an active conformation, while the small-molecule agonist binds deep inside the orthosteric pocket, making similar key interactions. Comparison with antagonist-bound OX2R suggests a molecular mechanism that rationalizes both receptor activation and inhibition. Our results enable structure-based discovery of therapeutic orexin agonists for the treatment of NT1 and other hypersomnia disorders.

MeSH terms

  • Aminopyridines / chemistry*
  • Aminopyridines / metabolism
  • Azepines / chemistry*
  • Azepines / metabolism
  • Binding Sites
  • Cloning, Molecular
  • Cryoelectron Microscopy
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Gene Expression
  • Genetic Vectors / chemistry
  • Genetic Vectors / metabolism
  • HEK293 Cells
  • Humans
  • Molecular Dynamics Simulation
  • Orexin Receptor Antagonists / chemistry*
  • Orexin Receptor Antagonists / metabolism
  • Orexin Receptors / agonists
  • Orexin Receptors / chemistry*
  • Orexin Receptors / metabolism
  • Peptides / chemistry*
  • Peptides / metabolism
  • Protein Binding
  • Protein Conformation, alpha-Helical
  • Protein Conformation, beta-Strand
  • Protein Interaction Domains and Motifs
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Sleep Aids, Pharmaceutical / chemistry*
  • Sleep Aids, Pharmaceutical / metabolism
  • Sulfonamides / chemistry*
  • Sulfonamides / metabolism
  • Triazoles / chemistry*
  • Triazoles / metabolism

Substances

  • Aminopyridines
  • Azepines
  • HCRTR2 protein, human
  • N-ethyl-2-((6-methoxy-pyridin-3-yl)-(toluene-2-sulphonyl)amino)-N-pyridin-3-ylmethyl-acetamide
  • Orexin Receptor Antagonists
  • Orexin Receptors
  • Peptides
  • Recombinant Proteins
  • Sleep Aids, Pharmaceutical
  • Sulfonamides
  • Triazoles
  • suvorexant