The complete chloroplast genome sequence of Vitis vinifera × V itis labrusca 'Shenhua'

Lipeng Zhang; Dinghan Guo; Miaomiao Liu; Feifei Dou; Yi Ren; Dongmei Li; Shiping Wang; Lei Wang; Chao Ma; Qian Zha; Ling Su; Lei Gong; Huaifeng Liu

doi:10.1080/23802359.2020.1855605

The complete chloroplast genome sequence of Vitis vinifera × V itis labrusca 'Shenhua'

Mitochondrial DNA B Resour. 2021 Jan 16;6(1):166-167. doi: 10.1080/23802359.2020.1855605.

Authors

Lipeng Zhang^{1

2}, Dinghan Guo^{1

2}, Miaomiao Liu^{1

2}, Feifei Dou^{1

2}, Yi Ren³, Dongmei Li³, Shiping Wang³, Lei Wang³, Chao Ma³, Qian Zha⁴, Ling Su⁵, Lei Gong⁵, Huaifeng Liu^{1

2}

Affiliations

¹ Department of Horticulture, College of Agriculture, Shihezi University, Shihezi, Xinjiang, China.
² Xinjiang Production and Construction Corps Key Laboratory of Special Fruits and Vegetables Cultivation Physiology and Germplasm Resources Utilization, Shihezi, Xinjiang, China.
³ Department of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.
⁴ Shanghai Academy of Agriculture Sciences, Shanghai, China.
⁵ Shandong Academy of Grape, Jinan, Shandong, China.

Abstract

Vitis vinifera × Vitis labrusca 'Shenhua' is a tetraploid grape, a Franco-american species. This study first published the complete chloroplast genome of Vitis vinifera × Vitis labrusca 'Shenhua' was assembled. The chloroplast genome is 160928 bp in length, including a large single copy region (89,148 bp), a small single-copy region (19,072 bp) and a pair of inverted repeats of 26,354 bp. The chloroplast genome encodes 133 genes, comprising 88 CDSs, 37 tRNA genes and 8 rRNA genes. The phylogenetic tree demonstrated that Vitis vinifera × Vitis labrusca 'Shenhua' is different from the other 16 varieties.

Keywords: Illumina sequencing; Vitis vinifera × Vitis labrusca ‘Shenhua’; chloroplast genome; phylogenetic analysis.

Grants and funding

This work was supported by the Shanghai municipal key task projects of ‘Prospering Agriculture by Science and Technology Plan’ (2020-02-08-00-08-F01458).