Charge Interactions in a Highly Charge-Depleted Protein

J Am Chem Soc. 2021 Feb 17;143(6):2500-2508. doi: 10.1021/jacs.0c10789. Epub 2021 Feb 2.

Abstract

Electrostatic forces are important for protein folding and are favored targets of protein engineering. However, interactions between charged residues are difficult to study because of the complex network of interactions found in most proteins. We have designed a purposely simple system to investigate this problem by systematically introducing individual and pairs of charged and titratable residues in a protein otherwise free of such residues. We used constant pH molecular dynamics simulations, NMR spectroscopy, and thermodynamic double mutant cycles to probe the structure and energetics of the interaction between the charged residues. We found that the partial burial of surface charges contributes to a shift in pKa value, causing an aspartate to titrate in the neutral pH range. Additionally, the interaction between pairs of residues was found to be highly context dependent, with some pairs having no apparent preferential interaction, while other pairs would engage in coupled titration forming a highly stabilized salt bridge. We find good agreement between experiments and simulations and use the simulations to rationalize our observations and to provide a detailed mechanistic understanding of the electrostatic interactions.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aspartic Acid / chemistry
  • Cellulase / chemistry*
  • Cellulase / genetics
  • Cellulomonas / enzymology
  • Histidine / chemistry
  • Molecular Dynamics Simulation
  • Mutation
  • Protein Conformation
  • Protein Domains / genetics
  • Protein Unfolding
  • Static Electricity*
  • Thermodynamics

Substances

  • Aspartic Acid
  • Histidine
  • Cellulase

Supplementary concepts

  • Cellulomonas fimi