Based on the assumption that dietary and faecal nitrogen correlate, the number of studies using faecal samples collected in the wild to understand diet selection by wild herbivores and other ecological patterns has been growing during the last years, especially due to the recent development of cheap tools for analysis of nutrients like Near-Infrared Reflectance Spectroscopy (NIRS). Within the annual reproductive cycle, cervids (members of the family Cervidae) face strong seasonal variations in nutritional demands, different for hinds (gestation and lactation) and stags (antler growth) and reflected in differential patterns of seasonal diet selection. In this study we aimed to quantify how pasture availability, season and individual factors like sex, age, reproductive status, body mass and body condition affect faecal nutrients in captive red deer with the goal of understanding how these factors may influence the interpretation of results from samples obtained in the wild with little or no information about the animals who dropped those faeces. We used NIRS for analysing nitrogen, neutral and acid detergent fibres in faeces. The relative influence of some individual factors like pregnancy was low (around 4%), while age and weight may induce a variability up to 18%. The presence or absence of pasture contributed to a variability around 13%, while the season contributed to an average variability around 17% (and up to 21% in certain situations). This high variability in faecal nutrients was observed in a controlled setting with captive animals and controlled diets. Thus, in natural situations we suspect that there would be even greater variation. According to the results, we recommend that preliminary research with captive animals of the species of interest should be conducted before collecting samples in the wild, which should help in the interpretation of results.