On-resin multicomponent protocols for biopolymer assembly and derivatization

Nat Protoc. 2021 Feb;16(2):561-578. doi: 10.1038/s41596-020-00445-6. Epub 2021 Jan 20.

Abstract

Solid-phase synthesis represents the methodological showcase for technological advances such as split-and-pool combinatorial chemistry and the automated synthesis of peptides, nucleic acids and polysaccharides. These strategies involve iterative coupling cycles that do not generate functional diversity besides that incorporated by the amino acids, nucleosides and monosaccharide building blocks. In sharp contrast, multicomponent reactions (MCRs) are traditionally used to generate both skeletal and appendage diversity in short, batchwise procedures. On-resin MCRs have traditionally been employed for the construction of heterocycle and peptidomimetic libraries, but that scenario has changed recently, and today the focus is more on the solid-phase derivatization of peptides and oligonucleotides. This review presents relevant experimental details and addresses the synthetic scope of such on-resin multicomponent protocols employed to accomplish specific biopolymer covalent modifications that are practically inviable by traditional solution-phase methodologies. Recommendations are provided to facilitate the implementation of solid-supported protocols and avoid possible pitfalls associated with the selection of the polymeric resin, the solvent and the order and amount of the reagents employed. We describe procedures comprising the multicomponent lipidation, biotinylation and labeling of both termini and the side chains, as well as the use of MCRs in the traceless on-resin synthesis of ligated and cyclic peptides. Solid-phase protocols for the assembly of α-helical and parallel β-sheet peptides as well as hybrid peptide-peptoid and peptide-peptide nucleic acid architectures are described. Finally, the solid-supported multicomponent derivatization of DNA oligonucleotides is illustrated as part of the DNA-encoded library technology relying on MCR-derived heterocyclic compounds.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Amines
  • Amino Acids
  • Biopolymers / biosynthesis
  • Biopolymers / chemistry*
  • Biotinylation
  • Combinatorial Chemistry Techniques / methods*
  • DNA
  • Heterocyclic Compounds
  • Oligonucleotides
  • Peptides / chemical synthesis
  • Peptides, Cyclic
  • Resins, Synthetic / chemistry
  • Solid-Phase Synthesis Techniques / methods*

Substances

  • Amines
  • Amino Acids
  • Biopolymers
  • Heterocyclic Compounds
  • Oligonucleotides
  • Peptides
  • Peptides, Cyclic
  • Resins, Synthetic
  • DNA