The complete chloroplast genome of Hippeastrum vittatum (Amaryllidaceae)

Peiling Li; Maofei Ren; Qingsong Zhu; Yan Zhang; Hanbing Xu; Zhiyong Wang; Songhu Liu; Qin Cheng; Benguo Liang

doi:10.1080/23802359.2020.1827059

The complete chloroplast genome of Hippeastrum vittatum (Amaryllidaceae)

Mitochondrial DNA B Resour. 2020 Oct 9;5(3):3521-3523. doi: 10.1080/23802359.2020.1827059.

Authors

Peiling Li^{1

2}, Maofei Ren^{1

2}, Qingsong Zhu^{1

2}, Yan Zhang^{1

2}, Hanbing Xu^{1

2}, Zhiyong Wang^{1

2}, Songhu Liu^{1

2}, Qin Cheng^{1

2}, Benguo Liang^{1

2}

Affiliations

¹ College of Horticulture, Xinyang Agricultural and Forestry University, Xinyang, China.
² Henan Key Laboratory of Tea Comprehensive Utilization in South Henan, Xinyang Agriculture and Forestry University, Xinyang, China.

Abstract

Hippeastrum vittatum (L'Hér.) Herb. is a perennial herb in the Amaryllidaceae, which has been used as a medicinal and ornamental plant. Here, we assembled and characterized the complete chloroplast (cp) genome of H. vittatum by high throughput sequencing. As a result, the length of the complete cp genome is 158,082 bp with a canonical quadripartite structure, consists of a large single-copy region (LSC) of 86,165 bp, a small single-copy region (SSC) of 18,283 bp, and two inverted repeat (IR) regions of 26,817 bp, each. A total of 137 genes were identified, including 87 protein-coding genes, 42 tRNA genes, and 8 rRNA genes. The phylogenomic analysis was performed based on the complete cp genomes of 30 species, which revealed the closest relationship between H. vittatum and H. rutilum in the genus Hippeastrum.

Keywords: Amaryllidaceae; Hippeastrum vittatum; complete chloroplast genome; phylogenetic analysis.

Grants and funding

This study was supported by Henan Science and Technology Research Project [172102110248, 172102110151, and 172102110263]; Teaching Reform Research Project of Xinyang Agriculture and Forestry University [2019XJGLX30]; Teaching Team of Facility Agricultural Science and Engineering Course in Xinyang Agriculture and Forestry University [JXTD201905]; Pilot project of Comprehensive Reform of Horticulture in Xinyang Agriculture and Forestry University [ZYZHGG201803]; The Open Fund of Henan Key Laboratory of Tea Comprehensive Utilization in South Henan [HNKLTOF2018007]; Technology Innovation Team of Xinyang Agriculture and Forestry University in 2020; Xinyang Key Laboratory of the Development and Utilization of Wild Plant Germplasm Resources in Dabie Mountain.