Cancer Omics in Africa: Present and Prospects

Front Oncol. 2020 Dec 14:10:606428. doi: 10.3389/fonc.2020.606428. eCollection 2020.

Abstract

During the last century, cancer biology has been arguably one of the most investigated research fields. To gain deeper insight into cancer mechanisms, scientists have been attempting to integrate multi omics data in cancer research. Cancer genomics, transcriptomics, metabolomics, proteomics, and metagenomics are the main multi omics strategies used currently in the diagnosis, prognosis, treatment, and biomarker discovery in cancer. In this review, we describe the use of different multi omics strategies in cancer research in the African continent and discuss the main challenges facing the implementation of these approaches in African countries such as the lack of training programs in bioinformatics in general and omics strategies in particular and suggest paths to address deficiencies. As a way forward, we advocate for the establishment of an "African Cancer Genomics Consortium" to promote intracontinental collaborative projects and enhance engagement in research activities that address indigenous aspects for cancer precision medicine.

Keywords: African continent; cancer genomics; epigenomics; metabolomics; metagenomics; multi omics; proteomics; transcriptomics.

Publication types

  • Review