Evolution in non-peptide α-helix mimetics on the road to effective protein-protein interaction modulators

Eur J Med Chem. 2021 Feb 5:211:113015. doi: 10.1016/j.ejmech.2020.113015. Epub 2020 Nov 12.

Abstract

Modulation of interactome networks, essentially protein-protein interactions (PPIs), might represent valuable therapeutic approaches to different pathological conditions. Since a high percentage of PPIs are mediated by α-helical structures at the interacting surface, the development of compounds able to reproduce the amino acid side-chain organization of α-helices (e.g. stabilized α-helix peptides and β-derivatives, proteomimetics, and α-helix small-molecule mimetics) focuses the attention of different research groups. This appraisal describes the recent progress in the non-peptide α-helix mimetics field, which has evolved from single-face to multi-face reproducing compounds and from oligomeric to monomeric scaffolds able to bear different substituents in similar spatial dispositions as the side-chains in canonical helices. Grouped by chemical structures, the review contemplates terphenyl-like molecules, oligobenzamides and heterocyclic analogues, benzamide-amino acid conjugates and non-oligomeric small-molecules mimetics, among others, and their effectiveness to stabilize/disrupt therapeutically relevant PPIs. The X-ray structures of a couple of oligomeric peptidomimetics and of some small-molecules complexed with the MDM2 protein, as well as the state of the art on their development in clinical trials, are also remarked. The discovery of a continuously increasing number of new disease-relevant PPIs could offer future opportunities for these and other forthcoming α-helix mimetics.

Keywords: Non-peptide α-helix mimetics; Protein-protein interactions; Proteomimetics; Small-molecules.

Publication types

  • Review

MeSH terms

  • Amino Acids / chemistry*
  • Benzamides / chemistry*
  • Heterocyclic Compounds / chemistry*
  • Humans
  • Molecular Structure
  • Peptidomimetics
  • Protein Binding
  • Proto-Oncogene Proteins c-mdm2 / chemistry*
  • Small Molecule Libraries / chemistry*

Substances

  • Amino Acids
  • Benzamides
  • Heterocyclic Compounds
  • Peptidomimetics
  • Small Molecule Libraries
  • MDM2 protein, human
  • Proto-Oncogene Proteins c-mdm2