Crystal structure of bacterial cytotoxic necrotizing factor CNFY reveals molecular building blocks for intoxication

EMBO J. 2021 Feb 15;40(4):e105202. doi: 10.15252/embj.2020105202. Epub 2021 Jan 7.

Abstract

Cytotoxic necrotizing factors (CNFs) are bacterial single-chain exotoxins that modulate cytokinetic/oncogenic and inflammatory processes through activation of host cell Rho GTPases. To achieve this, they are secreted, bind surface receptors to induce endocytosis and translocate a catalytic unit into the cytosol to intoxicate host cells. A three-dimensional structure that provides insight into the underlying mechanisms is still lacking. Here, we determined the crystal structure of full-length Yersinia pseudotuberculosis CNFY . CNFY consists of five domains (D1-D5), and by integrating structural and functional data, we demonstrate that D1-3 act as export and translocation module for the catalytic unit (D4-5) and for a fused β-lactamase reporter protein. We further found that D4, which possesses structural similarity to ADP-ribosyl transferases, but had no equivalent catalytic activity, changed its position to interact extensively with D5 in the crystal structure of the free D4-5 fragment. This liberates D5 from a semi-blocked conformation in full-length CNFY , leading to higher deamidation activity. Finally, we identify CNF translocation modules in several uncharacterized fusion proteins, which suggests their usability as a broad-specificity protein delivery tool.

Keywords: Yersinia; AB-toxin; ADP-ribosyl transferase; CNF; DUF4765.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Toxins / chemistry*
  • Bacterial Toxins / metabolism*
  • Biological Transport
  • Carcinoma, Squamous Cell / metabolism
  • Carcinoma, Squamous Cell / microbiology
  • Carcinoma, Squamous Cell / pathology*
  • Crystallization
  • Crystallography, X-Ray
  • Cytosol / metabolism*
  • Escherichia coli Proteins / chemistry*
  • Escherichia coli Proteins / metabolism*
  • Humans
  • Laryngeal Neoplasms / metabolism
  • Laryngeal Neoplasms / microbiology
  • Laryngeal Neoplasms / pathology*
  • Protein Conformation
  • Tumor Cells, Cultured
  • Yersinia pseudotuberculosis / metabolism*
  • rhoA GTP-Binding Protein / metabolism*

Substances

  • Bacterial Toxins
  • Escherichia coli Proteins
  • cytotoxic necrotizing factor type 1
  • rhoA GTP-Binding Protein

Associated data

  • PDB/6YHK
  • PDB/6YHL
  • PDB/6YHM
  • PDB/6YHN