Mapping quantitative trait loci and predicting candidate genes for leaf angle in maize

PLoS One. 2021 Jan 6;16(1):e0245129. doi: 10.1371/journal.pone.0245129. eCollection 2021.

Abstract

Leaf angle of maize is a fundamental determinant of plant architecture and an important trait influencing photosynthetic efficiency and crop yields. To broaden our understanding of the genetic mechanisms of leaf angle formation, we constructed a F3:4 recombinant inbred lines (RIL) population to map QTL for leaf angle. The RIL was derived from a cross between a model inbred line (B73) with expanded leaf architecture and an elite inbred line (Zheng58) with compact leaf architecture. A sum of eight QTL were detected on chromosome 1, 2, 3, 4 and 8. Single QTL explained 4.3 to 14.2% of the leaf angle variance. Additionally, some important QTL were confirmed through a heterogeneous inbred family (HIF) approach. Furthermore, twenty-four candidate genes for leaf angle were predicted through whole-genome re-sequencing and expression analysis in qLA02-01and qLA08-01 regions. These results will be helpful to elucidate the genetic mechanism of leaf angle formation in maize and benefit to clone the favorable allele for leaf angle. Besides, this will be helpful to develop the novel maize varieties with ideal plant architecture through marker-assisted selection.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Chromosome Mapping
  • Chromosomes, Plant / genetics*
  • Genetic Linkage*
  • Plant Leaves / genetics*
  • Quantitative Trait Loci*
  • Zea mays / growth & development*

Grants and funding

This work was funded by National Natural Science Foundation of China (grant number 31471151). The funder had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.