Variation in the expression of cytochrome P450-related miRNAs and transcriptional factors in human livers: Correlation with cytochrome P450 gene phenotypes

Toxicol Appl Pharmacol. 2021 Feb 1:412:115389. doi: 10.1016/j.taap.2020.115389. Epub 2020 Dec 30.

Abstract

Cytochrome P450 (CYP) gene expression exhibits large interindividual variation attributable to diverse regulatory factors including microRNAs (miRNAs) and hepatic transcription factors (TFs). We used real-time qPCR with 106 human liver samples to measure the expression and interindividual variation of seven miRNAs and four TFs that have been reported to regulate the expression of CYPs; we also identified factors that influence their expression. The results show that expression of the seven miRNAs and the four TFs exhibits a non-normal distribution and the expression variability is high (89- to 618-fold for miRNA and 12- to 85-fold for TFs). Age contributed to the interindividual variation for miR-148a, miR-27b and miR-34a, whereas cigarette smoking and alcohol consumption significantly reduced HNF4α mRNA levels. Association analysis showed significant correlations among the seven miRNAs as well as the four TFs. Furthermore, we systematically evaluated the impact of the seven miRNAs and four TFs on protein content, mRNA levels, translation efficiency and activity of 10 CYPs. The results show that numerous associations (positive and negative) are present between the seven miRNAs or the four TFs and the 10 CYP phenotypes (as indicated by mRNA, protein and activity); specifically, miR-27b, miR-34a and all four TFs played key roles in the interindividual variation of CYPs. Our results extend previous findings and suggest that miR-27b and miR-34a may be potential direct or indirect master regulators of CYP expression and thereby contribute to the interindividual variations in CYP-mediated drug metabolism.

Keywords: Correlation Analysis; Cytochrome P450; Interindividual Variation; Transcription Factors; microRNAs.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Age Factors
  • Alcohol Drinking / genetics
  • Alcohol Drinking / metabolism
  • Biological Variation, Population*
  • Cytochrome P-450 Enzyme System / genetics*
  • Cytochrome P-450 Enzyme System / metabolism
  • Female
  • Gene Expression Regulation, Enzymologic
  • Genetic Heterogeneity
  • Hepatocyte Nuclear Factor 4 / genetics
  • Hepatocyte Nuclear Factor 4 / metabolism
  • Humans
  • Isoenzymes
  • Liver / enzymology*
  • Male
  • MicroRNAs / genetics*
  • MicroRNAs / metabolism
  • Phenotype
  • Smoking / genetics
  • Smoking / metabolism
  • Transcription Factors / genetics*
  • Transcription Factors / metabolism

Substances

  • HNF4A protein, human
  • Hepatocyte Nuclear Factor 4
  • Isoenzymes
  • MIRN27b microRNA, human
  • MIRN34 microRNA, human
  • MicroRNAs
  • Transcription Factors
  • Cytochrome P-450 Enzyme System