Complete chloroplast genome sequence of an endangered Ottelia cordata and its phylogenetic analysis

Qingfeng Zhang; Zhixin Shen; Fangyuan Li; Gaojun Li; Jie Shen

doi:10.1080/23802359.2020.1768921

Complete chloroplast genome sequence of an endangered Ottelia cordata and its phylogenetic analysis

Mitochondrial DNA B Resour. 2020 May 28;5(3):2209-2210. doi: 10.1080/23802359.2020.1768921. eCollection 2020.

Authors

Qingfeng Zhang¹, Zhixin Shen¹, Fangyuan Li¹, Gaojun Li¹, Jie Shen¹

Affiliation

¹ Hainan Academy of Ocean and Fisheries Sciences, Haikou, China.

Abstract

Ottelia cordata is a typical submerged plant to the family of hydrocharitaceae. In this work, complete chloroplast genome of O. cordata was assembled and characterized from high-throughput Illumina sequencing data. The chloroplasgenome of O. cordatais 157,869bp in length. The O. cordata cp genome encodes 128 functional genes, including 85 protein-coding genes, 35 tRNA genes, and 8 rRNA genes. The GC content of the genome was 36,57%. Its nucleotide composition is asymmetric with an overall A + T content of 63.44%. Phylogenetic analysis indicated that O. cordata is closely related to the Elodea. These results could offer molecular markers and helpful in understanding about the role of O. cordata evolution and protection.

Keywords: Ottelia cordata; complete chloroplast genome; high-throughput sequencing; phylogenetic analysis.

Associated data

figshare/10.6084/m9.figshare.12089679

Grants and funding

This research was supported by the [Development and application of Ocean and Fishery Science and Technology] under Grant [R100263.304]; [The Central Guidance Local Science and technology development special fund] under Grant [ZY2019HN03]. The authors would like to acknowledge Dr. Zhiguang Zhao from Lanzhou university for the excellent advice on this paper.