In this study, the complete mitochondrial genome of Corvus corone orientalis was assembled through next-generation sequencing data. This circular mitochondrial genome of C. corone orientalis is 16,947 bp in length and has a base composition of A (30.8%), T (24.7%), C (29.9%), and G (14.5%), demonstrating a bias of higher AT content (55.5%) than GC content (44.5%). The mitochondrial genome contains a typically conserved structure among bird mitogenomes, encoding 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNA), two ribosomal RNA genes (12S rRNA and 16S rRNA), and a control region (D-loop region). Except ND6, all other PCGs were located on the H-strand. ATP8 gene and ATP6 gene were overlapped by 8 bp. The whole mt genome of C. corone orientalis and other Corvoidea mitogenomes (24 species, in total) were used for phylogenetic analysis. The result indicated C. corone orientalis has the closest relationship with Corvus cornix cornix (NC_024698) and clustered within clade of genus Corvus.
Keywords: Corvus corone orientalis; assembly; mitochondrial genome; phylogeny.
© 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.