Complete genome sequence of Janibaecter indicus YB324 from an Atlantic marine sediment

Shengxiang Pei; Fuquan Xie; Rui Zhang; Gaiyun Zhang

doi:10.1016/j.margen.2020.100833

Complete genome sequence of Janibaecter indicus YB324 from an Atlantic marine sediment

Mar Genomics. 2021 Aug:58:100833. doi: 10.1016/j.margen.2020.100833. Epub 2020 Dec 17.

Authors

Shengxiang Pei¹, Fuquan Xie², Rui Zhang³, Gaiyun Zhang⁴

Affiliations

¹ Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen 361005, Fujian, PR China; State Key Laboratory of Marine Environmental Science, College of Ocean and EarthSciences, Xiamen University, Xiamen 361102, Fujian, PR China.
² Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen 361005, Fujian, PR China.
³ State Key Laboratory of Marine Environmental Science, College of Ocean and EarthSciences, Xiamen University, Xiamen 361102, Fujian, PR China; Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519080, PR China.
⁴ Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen 361005, Fujian, PR China. Electronic address: zhgyun@tio.org.cn.

PMID: 33341425
DOI: 10.1016/j.margen.2020.100833

Abstract

Janibacter indicus YB324, a gram-positive, aerobic and non-motile actinobacterium isolated from south Atlantic sediment at a depth of 2875 m. The complete genome sequence of the strain YB324 was obtained using PacBio Sequel HGAP.4 and comprised of 3,369,845 base pairs with a 71.3 mol% G + C content, 3225 protein-coding genes, 53 RNAs. In silico analysis confirmed the genes associated with polysaccharide hydrolyzation, nitrite reduction, and phenol degradation. Multiple natural product biosynthesis gene clusters were identified as well. The complete genome sequence will provide insight into the potential use of this strain in biotechnological and natural product biosynthesis applications.

Keywords: Biosynthesis; Biotechnological; Degradation; Janibacter indicus.

MeSH terms

Actinobacteria / genetics*
Atlantic Ocean
Genome, Bacterial*
Geologic Sediments / microbiology*
Phylogeny
Whole Genome Sequencing

Supplementary concepts

Janibacter indicus