Activity-Based Protein Profiling Reveals Potential Dasatinib Targets in Gastric Cancer

Int J Mol Sci. 2020 Dec 4;21(23):9276. doi: 10.3390/ijms21239276.

Abstract

Dasatinib is a multi-target kinase inhibitor, whose targets include BCR-ABL, SRC family kinases, and various cancer kinases. The elevated SRC activity in gastric cancer (GC) has prompted the need for the therapeutic application of dasatinib in GC. We observed that the efficacy of dasatinib varied with the GC cell lines. The differential effect of dasatinib was not correlated with the basal SRC activity of each cell line. Moreover, the GC cell lines showing the strong antitumor effects of dasatinib were refractory to other SRC inhibitors, i.e., bosutinib and saracatinib, suggesting that unexpected dasatinib's targets could exist. To profile the targets of dasatinib in GC, we performed activity-based protein profiling (ABPP) via mass spectrometry using a desthiobiotin-ATP probe. We identified 29 and 18 kinases as potential targets in dasatinib-sensitive (SNU-216, MKN-1) and -resistant (SNU-484, SNU-601) cell lines, respectively. The protein-protein interaction mapping of the differential drug targets in dasatinib-sensitive and -resistant GC using the STRING database suggested that dasatinib could target cellular energy homeostasis in the drug-sensitive GC. RNAi screening for identified targets indicated p90RSK could be a novel dasatinib target, which is important for maintaining the viability and motility of GC cells. Further functional validation of dasatinib off-target actions will provide more effective therapeutic options for GC.

Keywords: LC–MS/MS; activity-based protein profiling; dasatinib; gastric cancer.

MeSH terms

  • Apoptosis / drug effects
  • Biomarkers, Tumor / metabolism*
  • Cell Line, Tumor
  • Cell Movement / drug effects
  • Cell Proliferation / drug effects
  • Cell Survival / drug effects
  • Chromatography, Liquid
  • Dasatinib / pharmacology*
  • Dasatinib / therapeutic use
  • Humans
  • Molecular Targeted Therapy
  • Phenotype
  • Protein Kinase Inhibitors / pharmacology*
  • Protein Kinase Inhibitors / therapeutic use
  • Proteome*
  • Proteomics* / methods
  • Stomach Neoplasms / drug therapy
  • Stomach Neoplasms / metabolism*
  • Stomach Neoplasms / pathology
  • Tandem Mass Spectrometry

Substances

  • Biomarkers, Tumor
  • Protein Kinase Inhibitors
  • Proteome
  • Dasatinib