Upregulation of a KN1 homolog by transposon insertion promotes leafy head development in lettuce

Proc Natl Acad Sci U S A. 2020 Dec 29;117(52):33668-33678. doi: 10.1073/pnas.2019698117. Epub 2020 Dec 7.

Abstract

Leafy head is a unique type of plant architecture found in some vegetable crops, with leaves bending inward to form a compact head. The genetic and molecular mechanisms underlying leafy head in vegetables remain poorly understood. We genetically fine-mapped and cloned a major quantitative trait locus controlling heading in lettuce. The candidate gene (LsKN1) is a homolog of knotted 1 (KN1) from Zea mays Complementation and CRISPR/Cas9 knockout experiments confirmed the role of LsKN1 in heading. In heading lettuce, there is a CACTA-like transposon inserted into the first exon of LsKN1 (LsKN1▽). The transposon sequences act as a promoter rather than an enhancer and drive high expression of LsKN1▽. The enhanced expression of LsKN1▽ is necessary but not sufficient for heading in lettuce. Data from ChIP-sequencing, electrophoretic mobility shift assays, and dual luciferase assays indicate that the LsKN1▽ protein binds the promoter of LsAS1 and down-regulates its expression to alter leaf dorsoventrality. This study provides insight into plant leaf development and will be useful for studies on heading in other vegetable crops.

Keywords: dorsoventrality; leaf development; leafy head; transposon.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • DNA Transposable Elements / genetics*
  • Gene Duplication
  • Gene Expression Regulation, Plant*
  • Genes, Plant
  • Lactuca / anatomy & histology
  • Lactuca / genetics*
  • Mutagenesis, Insertional / genetics*
  • Phylogeny
  • Plant Leaves / anatomy & histology
  • Plant Leaves / genetics*
  • Plant Leaves / growth & development*
  • Plant Proteins / chemistry
  • Plant Proteins / genetics*
  • Promoter Regions, Genetic / genetics
  • Protein Binding
  • Quantitative Trait Loci / genetics
  • Sequence Homology, Nucleic Acid
  • Transcription, Genetic
  • Up-Regulation / genetics*

Substances

  • DNA Transposable Elements
  • Plant Proteins