Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Kottbus Strain Kharkiv, Isolated from a Commercial Pork Production Facility in Ukraine

Vasiliy Arefiev; Ganna Kovalenko; Maciej Frant; Tetiana Chumachenko; Yuliia Polyvianna; Svitlana Pivnenko; Vitaliy Bolotin; Olga Mayboroda; Oleksii Solodiankin; Oleksandr Tarasov; Maksym Bezyemenni; Cora Lyon; Matthew Redlinger; Maryna Sapachova; Andrii A Mezhenskyi; Anne-Lise Ducluzeau; Eric Bortz; Anton Gerilovych; Devin M Drown

doi:10.1128/MRA.01171-20

Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Kottbus Strain Kharkiv, Isolated from a Commercial Pork Production Facility in Ukraine

Microbiol Resour Announc. 2020 Dec 3;9(49):e01171-20. doi: 10.1128/MRA.01171-20.

Authors

Vasiliy Arefiev¹, Ganna Kovalenko², Maciej Frant³, Tetiana Chumachenko⁴, Yuliia Polyvianna⁴, Svitlana Pivnenko⁴, Vitaliy Bolotin¹, Olga Mayboroda¹, Oleksii Solodiankin¹, Oleksandr Tarasov², Maksym Bezyemenni², Cora Lyon⁵, Matthew Redlinger⁵, Maryna Sapachova⁶, Andrii A Mezhenskyi⁶, Anne-Lise Ducluzeau⁷, Eric Bortz^{2

5}, Anton Gerilovych¹, Devin M Drown^{8

9}

Affiliations

¹ National Scientific Center, Institute of Experimental and Clinical Veterinary Medicine, Kharkiv, Ukraine.
² National Academy of Agrarian Sciences of Ukraine, Institute for Veterinary Medicine, Kyiv, Ukraine.
³ National Veterinary Research Institute, Pulawy, Poland.
⁴ Kharkiv National Medical University, State Institution Kharkiv Oblast Laboratory Center of the Ministry of Health of Ukraine, Kharkiv, Ukraine.
⁵ Department of Biological Sciences, University of Alaska Anchorage, Anchorage, Alaska, USA.
⁶ State Scientific Research Institute of Laboratory Diagnostics and Veterinary and Sanitary Expertise, Kyiv, Ukraine.
⁷ Department of Biology and Wildlife, University of Alaska Fairbanks, Fairbanks, Alaska, USA.
⁸ Department of Biology and Wildlife, University of Alaska Fairbanks, Fairbanks, Alaska, USA dmdrown@alaska.edu.
⁹ Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks, Alaska, USA.

Abstract

The complete genome of Salmonella enterica subsp. enterica serovar Kottbus strain Kharkiv (serogroup C2-C3), which was isolated from a commercial pork production facility in Kharkiv, Ukraine, was assembled using long-read Nanopore sequences. A single circular contig (4,799,045 bp) comprised a complete chromosome encoding antibiotic resistance, highlighting the risk of cross-species livestock and human infection.

Grants and funding

P20 GM103395/GM/NIGMS NIH HHS/United States