RNA Interference (RNAi) in Tomato Crop Research

Methods Mol Biol. 2021:2264:163-175. doi: 10.1007/978-1-0716-1201-9_11.

Abstract

RNA interference (RNAi) is a posttranscriptional gene silencing phenomenon induced by double-stranded RNA. It has been widely used as a knockdown technology to analyze gene function in many organisms. In tomato, RNAi technology has widely been used as a reverse genetic tool for functional genomics study. Generally, RNAi is often achieved through transgenes producing hairpin RNA molecules. RNAi lines have the advantage with respect to more modern CRISPR/Cas9 mutants of different levels of downregulation of target gene, and allow the characterization of life-essential genes that cannot be knocked out without killing the organism. Also, RNAi allows to suppress gene expression in multigene families in a regulated manner. In this chapter, an efficient approach to create RNAi stable knockdown-transformed tomato lines is reported. In order, it describes the choice of the target silencing fragment, a highly efficient cloning strategy for the hairpin RNA construct production, a relatively easy procedure to transform and regenerate tomato plants using Agrobacterium tumefaciens and a methodology to test the goodness of the transformation procedure.

Keywords: Agrobacterium-mediated transformation; Gateway cloning; RNA interference; Silencing; Tomato.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Agrobacterium tumefaciens / genetics*
  • Gene Silencing*
  • Plant Proteins / antagonists & inhibitors*
  • Plant Proteins / genetics
  • Plants, Genetically Modified / genetics*
  • Plants, Genetically Modified / growth & development
  • RNA Interference*
  • RNA, Double-Stranded
  • Solanum lycopersicum / genetics*
  • Solanum lycopersicum / growth & development
  • Transformation, Genetic*
  • Transgenes

Substances

  • Plant Proteins
  • RNA, Double-Stranded