Natural variation of the cardiac transcriptome in humans

RNA Biol. 2021 Oct;18(10):1374-1381. doi: 10.1080/15476286.2020.1857508. Epub 2020 Dec 11.

Abstract

We investigated the gene-expression variation among humans by analysing previously published mRNA-seq and ribosome footprint profiling of heart left-ventricles from healthy donors. We ranked the genes according to their coefficient of variation values and found that the top 5% most variable genes had special features compared to the rest of the genome, such as lower mRNA levels and shorter half-lives coupled to increased translation efficiency. We observed that these genes are mostly involved with immune response and have a pleiotropic effect on disease phenotypes, indicating that asymptomatic conditions contribute to the gene expression diversity of healthy individuals.

Keywords: Gene expression profiling; genetic variation; heart ventricles; human heart; ribosome profiling; translatome.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Computational Biology / methods*
  • Databases, Genetic
  • Gene Expression Regulation
  • Gene Regulatory Networks*
  • Humans
  • Myocardium / chemistry*
  • Sequence Analysis, RNA

Grants and funding

This work was supported by Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), Fundação de Amparo à Pesquisa do Estado do Rio de Janeiro (FAPERJ), and Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES).