Structural basis for assembly of non-canonical small subunits into type I-C Cascade

Nat Commun. 2020 Nov 23;11(1):5931. doi: 10.1038/s41467-020-19785-8.

Abstract

Bacteria and archaea employ CRISPR (clustered, regularly, interspaced, short palindromic repeats)-Cas (CRISPR-associated) systems as a type of adaptive immunity to target and degrade foreign nucleic acids. While a myriad of CRISPR-Cas systems have been identified to date, type I-C is one of the most commonly found subtypes in nature. Interestingly, the type I-C system employs a minimal Cascade effector complex, which encodes only three unique subunits in its operon. Here, we present a 3.1 Å resolution cryo-EM structure of the Desulfovibrio vulgaris type I-C Cascade, revealing the molecular mechanisms that underlie RNA-directed complex assembly. We demonstrate how this minimal Cascade utilizes previously overlooked, non-canonical small subunits to stabilize R-loop formation. Furthermore, we describe putative PAM and Cas3 binding sites. These findings provide the structural basis for harnessing the type I-C Cascade as a genome-engineering tool.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism
  • Binding Sites
  • CRISPR-Associated Proteins / chemistry*
  • CRISPR-Associated Proteins / metabolism*
  • CRISPR-Cas Systems*
  • Clustered Regularly Interspaced Short Palindromic Repeats / genetics
  • Cryoelectron Microscopy
  • DNA / chemistry
  • DNA / metabolism
  • Desulfovibrio vulgaris / chemistry
  • Desulfovibrio vulgaris / genetics
  • Models, Molecular
  • Multiprotein Complexes / chemistry
  • Multiprotein Complexes / metabolism
  • Nucleotide Motifs
  • Protein Conformation
  • Protein Subunits / chemistry
  • Protein Subunits / metabolism
  • RNA, Bacterial / chemistry
  • RNA, Bacterial / metabolism

Substances

  • Bacterial Proteins
  • CRISPR-Associated Proteins
  • Multiprotein Complexes
  • Protein Subunits
  • RNA, Bacterial
  • DNA