In this work, the recent lattice Boltzmann model with self-tuning equation of state (EOS) [R. Huang et al., J. Comput. Phys. 392, 227 (2019)]JCTPAH0021-999110.1016/j.jcp.2019.04.044 is improved in three aspects to simulate the thermal flows beyond the Boussinesq and ideal-gas approximations. First, an improved scheme is proposed to eliminate the additional cubic terms of velocity, which can significantly improve the numerical accuracy. Second, a local scheme is proposed to calculate the density gradient instead of the conventional finite-difference scheme. Third, a scaling factor is introduced into the lattice sound speed, which can be adjusted to effectively enhance numerical stability. The thermal Couette flow of a nonattracting rigid-sphere fluid, which is described by the Carnahan-Starling EOS, is first simulated, and the better performance of the present improvements on the numerical accuracy and stability is demonstrated. As a further application, the turbulent Rayleigh-Bénard convection in a supercritical fluid slightly above its critical point, which is described by the van der Waals EOS, is successfully simulated by the present lattice Boltzmann model. The piston effect of the supercritical fluid is successfully captured, which induces a fast and homogeneous increase of the temperature in the bulk region, and the time evolution from the initiation of heating to the final turbulent state is analyzed in detail and divided into five stages.