Identification of new IDH2R140Q inhibitors by discriminatory analysis-based molecular docking and biological evaluation

Abstract

Isocitrate dehydrogenase 2 (IDH2) is a key enzyme in the regulation of cell metabolism. Its mutated type can lead to the accumulation of 2-hydroxyglutarate, which is often related to malignancies such as acute myeloid leukemia. Therefore, it is necessary to find new inhibitors targeting mutant IDH2. Discriminatory analysis-based molecular docking was employed to screen the ChemDiv compound library, which resulted in the identification of three new IDH2^R140Q inhibitors with moderate-to-good IC₅₀ values. Among them, compounds 1 and 3 displayed good selectivity against other mutant or wild-type IDH proteins. The most potent compound 1, bearing the [1,2,4]triazolo[1,5-a]pyrimidin scaffold, was subjected to dynamic simulations to provide more information on the binding mode with IDH2^R140Q , providing structural clues to further optimize compound 1 as a new mutant IDH2 inhibitor.

Keywords: discriminatory analysis; inhibitors; isocitrate dehydrogenase 2; molecular docking; virtual screening.