Dimeric and Multimeric DNA Aptamers for Highly Effective Protein Recognition

Molecules. 2020 Nov 10;25(22):5227. doi: 10.3390/molecules25225227.

Abstract

Multivalent interactions frequently occur in biological systems and typically provide higher binding affinity and selectivity in target recognition than when only monovalent interactions are operative. Thus, taking inspiration by nature, bivalent or multivalent nucleic acid aptamers recognizing a specific biological target have been extensively studied in the last decades. Indeed, oligonucleotide-based aptamers are suitable building blocks for the development of highly efficient multivalent systems since they can be easily modified and assembled exploiting proper connecting linkers of different nature. Thus, substantial research efforts have been put in the construction of dimeric/multimeric versions of effective aptamers with various degrees of success in target binding affinity or therapeutic activity enhancement. The present review summarizes recent advances in the design and development of dimeric and multimeric DNA-based aptamers, including those forming G-quadruplex (G4) structures, recognizing different key proteins in relevant pathological processes. Most of the designed constructs have shown improved performance in terms of binding affinity or therapeutic activity as anti-inflammatory, antiviral, anticoagulant, and anticancer agents and their number is certainly bound to grow in the next future.

Keywords: G-quadruplex; aptamer; design; dimerization; molecular recognition; multivalency; protein target; therapy.

Publication types

  • Review

MeSH terms

  • Anti-Inflammatory Agents / chemistry
  • Anticoagulants / chemistry
  • Antineoplastic Agents / chemistry
  • Antiviral Agents / chemistry
  • Aptamers, Nucleotide / chemistry*
  • CD3 Complex / chemistry
  • Cell Adhesion Molecules / chemistry
  • DNA / chemistry
  • Dimerization
  • G-Quadruplexes*
  • Humans
  • Immunoglobulin M / chemistry
  • Nucleolin
  • Phosphoproteins / chemistry*
  • Protein Structure, Secondary
  • Proto-Oncogene Proteins c-met / chemistry
  • Pyrrolidines / chemistry
  • RNA-Binding Proteins / chemistry*
  • Receptor Protein-Tyrosine Kinases / chemistry
  • Receptors, Antigen, T-Cell / chemistry
  • Vascular Endothelial Growth Factor A / metabolism
  • Vitronectin / chemistry

Substances

  • Anti-Inflammatory Agents
  • Anticoagulants
  • Antineoplastic Agents
  • Antiviral Agents
  • Aptamers, Nucleotide
  • CD3 Complex
  • Cell Adhesion Molecules
  • Immunoglobulin M
  • Phosphoproteins
  • Pyrrolidines
  • RNA-Binding Proteins
  • Receptors, Antigen, T-Cell
  • Vascular Endothelial Growth Factor A
  • Vitronectin
  • DNA
  • pyrrolidin-3-yl-methanesulfonic acid
  • PTK7 protein, human
  • Proto-Oncogene Proteins c-met
  • Receptor Protein-Tyrosine Kinases