Integrative genomic analysis of pediatric T-cell lymphoblastic lymphoma reveals candidates of clinical significance

Blood. 2021 Apr 29;137(17):2347-2359. doi: 10.1182/blood.2020005381.

Abstract

T-cell lymphoblastic lymphoma (T-LBL) is a heterogeneous malignancy of lymphoblasts committed to T-cell lineage. The dismal outcomes (15%-30%) after T-LBL relapse warrant establishing risk-based treatment. To our knowledge, this study presents the first comprehensive, systematic, integrated, genome-wide analysis including relapsed cases that identifies molecular markers of prognostic relevance for T-LBL. NOTCH1 was identified as the putative driver for T-LBL. An activated NOTCH/PI3K-AKT signaling axis and alterations in cell cycle regulators constitute the core oncogenic program for T-LBL. Mutated KMT2D was identified as a prognostic marker. The cumulative incidence of relapse was 47% ± 17% in patients with KMT2D mutations, compared with 14% ± 3% in wild-type KMT2D. Structural analysis of the mutated domains of KMT2D revealed a plausible impact on structure and functional consequences. These findings provide new insights into the pathogenesis of T-LBL, including high translational potential. The ongoing LBL 2018 trial (www.clinicaltrials.gov #NCT04043494) allows for prospective validation and subsequent fine tuning of the stratification criteria for T-LBL risk groups to improve survival of pediatric patients.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adolescent
  • Biomarkers, Tumor / genetics*
  • Child
  • DNA-Binding Proteins / genetics*
  • Female
  • Follow-Up Studies
  • Gene Expression Regulation, Neoplastic
  • Genome, Human
  • Genomics / methods*
  • Humans
  • Male
  • Neoplasm Proteins / genetics*
  • Phosphatidylinositol 3-Kinases / genetics*
  • Precursor T-Cell Lymphoblastic Leukemia-Lymphoma / genetics
  • Precursor T-Cell Lymphoblastic Leukemia-Lymphoma / pathology*
  • Prognosis
  • Proto-Oncogene Proteins c-akt / genetics*
  • Receptor, Notch1 / genetics*
  • Survival Rate

Substances

  • Biomarkers, Tumor
  • DNA-Binding Proteins
  • KMT2D protein, human
  • NOTCH1 protein, human
  • Neoplasm Proteins
  • Receptor, Notch1
  • AKT1 protein, human
  • Proto-Oncogene Proteins c-akt

Associated data

  • ClinicalTrials.gov/NCT04043494