Targeting the initiation and termination codons of SARS-CoV-2 spike protein as possible therapy against COVID-19: the role of novel harpagide 5-O-β-D-glucopyranoside from Clerodendrum volubile P Beauv. (Labiatae)

J Biomol Struct Dyn. 2022 Apr;40(6):2475-2488. doi: 10.1080/07391102.2020.1840439. Epub 2020 Nov 3.

Abstract

The global spread of the coronavirus infections disease - 2019 (COVID-19) and the search for new drugs from natural products particularly from plants are receiving much attention recently. In this study, the therapeutic potential of a new iridoid glycoside isolated from the leaves of Clerodendrum volubile against COVID-19 was investigated. Harpagide 5-O-β-D-glucopyranoside (HG) was isolated, characterised and investigated for its druglikeness, optimized geometry, and pharmacokinetics properties. Its immunomodulatory was determined by chemiluminescence assay using polymorphonuclear neutrophils (PMNs) in addition to T-cell proliferation assay. In silico analysis was used in determining its molecular interaction with severe acute respiratory syndrome coronavirus-2 (SARS-COV-2). HG displayed potent druglikeness properties, with no inhibitory effect on cytochrome P450 (1A2, 2C19, 2C9, 2D6 and 3A4) and a predicted LD50 of 2000 mg/kg. Its 1H-NMR chemical shifts showed a little deviation of 0.01 and 0.11 ppm for H-4 and H-9, respectively. HG significantly suppressed oxidative bursts in PMNs, while concomitantly inhibiting T-cell proliferation. It also displayed a very strong binding affinity with the translation initiation and termination sequence sites of spike (S) protein mRNA of SARS-COV-2, its gene product, and host ACE2 receptor. These results suggest the immunomodulatory properties and anti-SARS-COV-2 potentials of HG which can be explored in the treatment and management of COVID-19.Communicated by Ramaswamy H. Sarma.

Keywords: COVID-19; Clerodendrum volubile; SARS-COV-2; and spike protein; harpagide 5-O-β-D-glucopyranoside.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • COVID-19 Drug Treatment
  • Clerodendrum* / chemistry
  • Codon, Terminator
  • Glucosides / pharmacology*
  • Humans
  • Iridoid Glycosides / pharmacology*
  • Pyrans
  • SARS-CoV-2 / drug effects*
  • SARS-CoV-2 / genetics
  • Spike Glycoprotein, Coronavirus* / chemistry

Substances

  • Codon, Terminator
  • Glucosides
  • Iridoid Glycosides
  • Pyrans
  • Spike Glycoprotein, Coronavirus
  • spike protein, SARS-CoV-2
  • harpagide

Grants and funding

This work was supported by The World Academy of Sciences.