In Silico Modeling of Spirolides and Gymnodimines: Determination of S Configuration at Butenolide Ring Carbon C-4

Toxins (Basel). 2020 Oct 29;12(11):685. doi: 10.3390/toxins12110685.

Abstract

Only few naturally occurring cyclic imines have been fully structurally elucidated or synthesized to date. The configuration at the C-4 carbon plays a pivotal role in the neurotoxicity of many of these metabolites, for example, gymnodomines (GYMs) and spirolides (SPXs). However, the stereochemistry at this position is not accessible by nuclear Overhauser effect-nuclear magnetic resonance spectroscopy (NOE-NMR) due to unconstrained rotation of the single carbon bond between C-4 and C-5. Consequently, the relative configuration of GYMs and SPXs at C-4 and its role in protein binding remains elusive. Here, we determined the stereochemical configuration at carbon C-4 in the butenolide ring of spirolide- and gymnodimine-phycotoxins by comparison of measured 13C NMR shifts with values obtained in silico using force field, semiempirical and density functional theory methods. This comparison demonstrated that modeled data support S configuration at C-4 for all studied SPXs and GYMs, suggesting a biosynthetically conserved relative configuration at carbon C-4 among these toxins.

Keywords: gymnodimines; marine biotoxins; shielding tensors; simulated NMR; spirolides; stereochemistry.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 4-Butyrolactone / analogs & derivatives
  • 4-Butyrolactone / chemistry
  • Carbon / chemistry
  • Heterocyclic Compounds, 3-Ring / chemistry*
  • Hydrocarbons, Cyclic / chemistry*
  • Imines / chemistry*
  • Molecular Dynamics Simulation
  • Spiro Compounds / chemistry*

Substances

  • Heterocyclic Compounds, 3-Ring
  • Hydrocarbons, Cyclic
  • Imines
  • Spiro Compounds
  • Carbon
  • gymnodimine
  • butenolide
  • 4-Butyrolactone