An Explainable Machine Learning Model for Early Detection of Parkinson's Disease using LIME on DaTSCAN Imagery

Comput Biol Med. 2020 Nov:126:104041. doi: 10.1016/j.compbiomed.2020.104041. Epub 2020 Oct 8.

Abstract

Parkinson's Disease (PD) is a degenerative and progressive neurological condition. Early diagnosis can improve treatment for patients and is performed through dopaminergic imaging techniques like the SPECT DaTSCAN. In this study, we propose a machine learning model that accurately classifies any given DaTSCAN as having Parkinson's disease or not, in addition to providing a plausible reason for the prediction. This kind of reasoning is done through the use of visual indicators generated using Local Interpretable Model-Agnostic Explainer (LIME) methods. DaTSCANs were drawn from the Parkinson's Progression Markers Initiative database and trained on a CNN (VGG16) using transfer learning, yielding an accuracy of 95.2%, a sensitivity of 97.5%, and a specificity of 90.9%. Keeping model interpretability of paramount importance, especially in the healthcare field, this study utilises LIME explanations to distinguish PD from non-PD, using visual superpixels on the DaTSCANs. It could be concluded that the proposed system, in union with its measured interpretability and accuracy may effectively aid medical workers in the early diagnosis of Parkinson's Disease.

Keywords: Computer-aided diagnosis; Convolutional neural network; Explainable AI; Interpretability; Parkinson's disease.

MeSH terms

  • Dopamine
  • Early Diagnosis
  • Humans
  • Machine Learning
  • Parkinson Disease* / diagnostic imaging
  • Tomography, Emission-Computed, Single-Photon

Substances

  • Dopamine