CRISPR/Cas9-mediated gene knockout in human adipose stem/progenitor cells

Adipocyte. 2020 Dec;9(1):626-635. doi: 10.1080/21623945.2020.1834230.

Abstract

The CRISPR/Cas9 system is a powerful tool to generate a specific loss-of-function phenotype by gene knockout (KO). However, this approach is challenging in primary human cells. In this technical report, we present a reliable protocol to achieve a functional KO in the genome of human adipose stem/progenitor cells (ASCs). Using Sprouty1 (SPRY1) as a model target gene for a CRISPR/Cas9 mediated KO, we particularize the procedure including the selection of the CRISPR/Cas9 target sequences and the employment of appropriate lentiviral vectors to obtain a functional gene KO. The efficiency of CRISPR/Cas9 to mutate the SPRY1 gene is determined by a PCR-based mutation detection assay and sequence analysis. Effects on mRNA and protein levels are studied by RT-qPCR and Western blotting. In addition, we demonstrate that CRISPR/Cas9 mediated SPRY1 KO and gene silencing by shRNA are similarly effective to deplete the Sprouty1 protein and to inhibit adipogenic differentiation. In summary, we show a reliable approach to achieve a gene KO in human ASCs, which could also apply to other primary cell types. Abbreviations: ASC: Adipogenic Stem/Progenitor Cell; Cas: CRISPR-associated system; CRISPR: Clustered Regularly Interspaced Palindromic Repeat; gDNA: Genomic DNA; GOI: Gene of interest; gRNA: Guide RNA; NHEJ: Non-homologous end joining; Indel: Insertion/Deletion; PAM: Protospacer adjacent motif; sWAT: Subcutaneous white adipose tissue; TIDE: Tracking of indels by decomposition.

Keywords: Adipose stem cells; CRISPR/Cas9; ageing; genome editing; loss-of-function; obesity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adipose Tissue / cytology*
  • Biomarkers
  • CRISPR-Cas Systems*
  • Cell Differentiation / genetics
  • Cell Line
  • Gene Editing*
  • Gene Knockout Techniques*
  • Genes, Reporter
  • Genetic Vectors / genetics
  • Humans
  • Mutation
  • RNA, Small Interfering / genetics
  • Stem Cells / metabolism*

Substances

  • Biomarkers
  • RNA, Small Interfering

Grants and funding

This work was supported by the Universität Innsbruck.