Multi-Omics Strategies for Decoding Smoke-Assisted Germination Pathways and Seed Vigour

Int J Mol Sci. 2020 Oct 12;21(20):7512. doi: 10.3390/ijms21207512.

Abstract

The success of seed germination and the successful establishment of seedlings across diverse environmental conditions depends on seed vigour, which is of both economic and ecologic importance. The smoke-derived exogenous compound karrikins (KARs) and the endogenous plant hormone strigolactone (SL) are two classes of butanolide-containing molecules that follow highly similar signalling pathways to control diverse biological activities in plants. Unravelling the precise mode-of-action of these two classes of molecules in model species has been a key research objective. However, the specific and dynamic expression of biomolecules upon stimulation by these signalling molecules remains largely unknown. Genomic and post-genomic profiling approaches have enabled mining and association studies across the vast genetic diversity and phenotypic plasticity. Here, we review the background of smoke-assisted germination and vigour and the current knowledge of how plants perceive KAR and SL signalling and initiate the crosstalk with the germination-associated hormone pathways. The recent advancement of 'multi-omics' applications are discussed in the context of KAR signalling and with relevance to their adoption for superior agronomic trait development. The remaining challenges and future opportunities for integrating multi-omics datasets associated with their application in KAR-dependent seed germination and abiotic stress tolerance are also discussed.

Keywords: dormancy; karrikin; multi-omics; proteomics; seed germination; smoke; vigour.

Publication types

  • Review

MeSH terms

  • Adaptation, Biological
  • Crops, Agricultural
  • Environment
  • Gene Expression Profiling*
  • Gene Expression Regulation, Plant
  • Gene-Environment Interaction
  • Germination / genetics*
  • Hybrid Vigor / genetics*
  • Plant Development / genetics*
  • Plant Growth Regulators / metabolism
  • Proteomics*
  • Seeds / genetics*
  • Signal Transduction
  • Smoke*

Substances

  • Plant Growth Regulators
  • Smoke