A non-canonical role for the autophagy machinery in anti-retroviral signaling mediated by TRIM5α

PLoS Pathog. 2020 Oct 14;16(10):e1009017. doi: 10.1371/journal.ppat.1009017. eCollection 2020 Oct.

Abstract

TRIM5α is a key cross-species barrier to retroviral infection, with certain TRIM5 alleles conferring increased risk of HIV-1 infection in humans. TRIM5α is best known as a species-specific restriction factor that directly inhibits the viral life cycle. Additionally, it is also a pattern-recognition receptor (PRR) that activates inflammatory signaling. How TRIM5α carries out its multi-faceted actions in antiviral defense remains incompletely understood. Here, we show that proteins required for autophagy, a cellular self-digestion pathway, play an important role in TRIM5α's function as a PRR. Genetic depletion of proteins involved in all stages of the autophagy pathway prevented TRIM5α-driven expression of NF-κB and AP1 responsive genes. One of these genes is the preeminent antiviral cytokine interferon β (IFN-β), whose TRIM5-dependent expression was lost in cells lacking the autophagy proteins ATG7, BECN1, and ULK1. Moreover, we found that the ability of TRIM5α to stimulate IFN-β expression in response to recognition of a TRIM5α-restricted HIV-1 capsid mutant (P90A) was abrogated in cells lacking autophagy factors. Stimulation of human macrophage-like cells with the P90A virus protected them against subsequent infection with an otherwise resistant wild type HIV-1 in a manner requiring TRIM5α, BECN1, and ULK1. Mechanistically, TRIM5α was attenuated in its ability to activate the kinase TAK1 in autophagy deficient cells, and both BECN1 and ATG7 contributed to the assembly of TRIM5α-TAK1 complexes. These data demonstrate a non-canonical role for the autophagy machinery in assembling antiviral signaling complexes and in establishing a TRIM5α-dependent antiviral state.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Antiviral Restriction Factors
  • Autophagy / genetics
  • Autophagy / physiology*
  • Autophagy-Related Protein-1 Homolog
  • Beclin-1
  • Capsid / metabolism
  • Capsid Proteins / metabolism
  • Carrier Proteins / metabolism
  • Cell Line
  • HEK293 Cells
  • HIV Infections / virology
  • HIV-1 / genetics
  • HeLa Cells
  • Humans
  • Interferon-beta / metabolism
  • Intracellular Signaling Peptides and Proteins
  • NF-kappa B / metabolism
  • Peptides / metabolism
  • Receptors, Pattern Recognition / metabolism*
  • Receptors, Pattern Recognition / physiology
  • Retroviridae Infections / virology
  • Species Specificity
  • THP-1 Cells
  • Tripartite Motif Proteins / metabolism*
  • Tripartite Motif Proteins / physiology
  • Ubiquitin-Protein Ligases / metabolism*
  • Ubiquitin-Protein Ligases / physiology

Substances

  • AP1 peptide
  • Antiviral Restriction Factors
  • BECN1 protein, human
  • Beclin-1
  • Capsid Proteins
  • Carrier Proteins
  • Intracellular Signaling Peptides and Proteins
  • NF-kappa B
  • Peptides
  • Receptors, Pattern Recognition
  • Tripartite Motif Proteins
  • Interferon-beta
  • TRIM5 protein, human
  • Ubiquitin-Protein Ligases
  • Autophagy-Related Protein-1 Homolog
  • ULK1 protein, human