Chryseobacterium cheonjiense sp. nov., isolated from forest soil

Arch Microbiol. 2021 Mar;203(2):725-731. doi: 10.1007/s00203-020-02065-w. Epub 2020 Oct 12.

Abstract

A yellow-pigmented, non-motile and rod-shaped bacterium, designated RJ-7-14T was obtained from forest soil sampled at Cheonji-dong, Seogwipo-si, Jeju-do, South Korea. Cells were Gram-stain-negative and produced flexirubin type pigments. A phylogenetic analysis based on its 16S rRNA gene sequence revealed that strain RJ-7-14T formed a lineage within the family Weeksellaceae and clustered as members of the genus Chryseobacterium. The closest members were Chryseobacterium geocarposphaerae DSM 27617T (98.2% sequence similarity), Chryseobacterium hispalense DSM 25574T (98.0%) and Chryseobacterium nepalense KACC 18907T (98.0%). The sequence similarity for other members was < 98.0%. The genome was 4,276,416 bp long with 9 scaffolds and 3779 protein-coding genes. The sole respiratory quinone was MK-6. The major cellular fatty acids were iso-C15:0, summed feature 9 (iso-C17:1 ω9c and/or C16:0 10-methyl), summed feature 3 (iso-C15:0 2-OH and/or C16: 1ω7c) and iso-C17:0 3-OH. The major polar lipid was phosphatidylethanolamine (PE). The DNA G + C content of the type strain was 37.2 mol%. In addition, the average nucleotide identity (ANIu) and in silico DNA-DNA hybridization (dDDH) relatedness values between strain RJ-7-14T and phylogenetically closest members were ≤ 88.2% and ≤ 35.0%, respectively, which were below the threshold values of 95-96% (for ANI) and 70% (for dDDH), suggesting the allocation of novel strain to a new species. Based on genomic, chemotaxonomic, phenotypic and phylogenetic analyses, strain RJ-7-14T represents novel species in the genus Chryseobacterium, for which the name Chryseobacterium cheonjiense sp. nov. is proposed. The type strain is RJ-7-14T (= KACC 21625T = NBRC 114362T).

Keywords: Bacteroidetes; Chryseobacterium cheonjiense; Flexirubin; New species; Weeksellaceae.

MeSH terms

  • Base Composition
  • Chryseobacterium / classification*
  • Chryseobacterium / genetics
  • Forests
  • Nucleic Acid Hybridization
  • Phosphatidylethanolamines
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Republic of Korea
  • Soil Microbiology*
  • Species Specificity

Substances

  • Phosphatidylethanolamines
  • RNA, Ribosomal, 16S
  • phosphatidylethanolamine

Supplementary concepts

  • Chryseobacterium geocarposphaerae
  • Chryseobacterium hispalense
  • Chryseobacterium nepalense