Probing of breast cancer using a combination of plasma and urinary circulating cell-free DNA

Biosci Rep. 2020 Nov 27;40(11):BSR20194306. doi: 10.1042/BSR20194306.

Abstract

Monitoring of early-stage breast cancer is critical in promptly addressing disease relapse. Circulating cell-free DNA provides a minimally invasive and sensitive means to probing the disease. In a longitudinal analysis of 250 patients with early breast cancer, we compared the circulating cell-free DNA recovered from both plasma and urine specimens. For comparison, 50 healthy controls were also recruited. Specific mutations associated with the disease were profiled to determine the clinical sensitivity and specificity. Correlations of recovered concentrations of cell-free DNA with outcomes were examined to address early prognostication. PIK3CA mutation profiling in both plasma and urinary cell-free DNA showed an agreement of 97.2% compared with the results obtained for tumor tissues. The analysis of healthy controls revealed that cell-free DNA measurements were stable and consistent over time. Over the short 6-month period of monitoring, our analyses showed declines in recovered cell-free DNA; these findings may aid physicians in stratifying patients at higher risk for relapse. Similar results were observed in both plasma and urine specimens (hazard ratios: 2.16 and 2.48, respectively). Cell-free DNA presents a novel and sensitive method for the monitoring of early-stage breast cancer. In the present study, serial measurements of both plasma and urine specimens were useful in probing the disease.

Keywords: Cancer Relapse; Cell free DNA; Early breast cancer; Minimal residual disease.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Biomarkers, Tumor / blood
  • Biomarkers, Tumor / genetics*
  • Biomarkers, Tumor / urine
  • Breast Neoplasms / blood
  • Breast Neoplasms / genetics*
  • Breast Neoplasms / therapy
  • Breast Neoplasms / urine
  • Case-Control Studies
  • Circulating Tumor DNA / blood
  • Circulating Tumor DNA / genetics*
  • Circulating Tumor DNA / urine
  • Class I Phosphatidylinositol 3-Kinases / blood
  • Class I Phosphatidylinositol 3-Kinases / genetics*
  • Class I Phosphatidylinositol 3-Kinases / urine
  • DNA Mutational Analysis*
  • Female
  • Genetic Predisposition to Disease
  • Humans
  • Longitudinal Studies
  • Middle Aged
  • Mutation*
  • Neoplasm Recurrence, Local
  • Neoplasm Staging
  • Phenotype
  • Predictive Value of Tests
  • Reproducibility of Results
  • Risk Assessment
  • Risk Factors
  • Time Factors
  • Treatment Outcome

Substances

  • Biomarkers, Tumor
  • Circulating Tumor DNA
  • Class I Phosphatidylinositol 3-Kinases
  • PIK3CA protein, human