Genome-wide transposon mutagenesis of paramyxoviruses reveals constraints on genomic plasticity

PLoS Pathog. 2020 Oct 9;16(10):e1008877. doi: 10.1371/journal.ppat.1008877. eCollection 2020 Oct.

Abstract

The antigenic and genomic stability of paramyxoviruses remains a mystery. Here, we evaluate the genetic plasticity of Sendai virus (SeV) and mumps virus (MuV), sialic acid-using paramyxoviruses that infect mammals from two Paramyxoviridae subfamilies (Orthoparamyxovirinae and Rubulavirinae). We performed saturating whole-genome transposon insertional mutagenesis, and identified important commonalities: disordered regions in the N and P genes near the 3' genomic end were more tolerant to insertional disruptions; but the envelope glycoproteins were not, highlighting structural constraints that contribute to the restricted antigenic drift in paramyxoviruses. Nonetheless, when we applied our strategy to a fusion-defective Newcastle disease virus (Avulavirinae subfamily), we could select for F-revertants and other insertants in the 5' end of the genome. Our genome-wide interrogation of representative paramyxovirus genomes from all three Paramyxoviridae subfamilies provides a family-wide context in which to explore specific variations within and among paramyxovirus genera and species.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • DNA Transposable Elements / genetics*
  • Genome, Viral*
  • Humans
  • Mutagenesis, Insertional*
  • Mutation*
  • Paramyxoviridae / classification
  • Paramyxoviridae / genetics*
  • Paramyxoviridae Infections / virology*
  • Viral Fusion Proteins / genetics*

Substances

  • DNA Transposable Elements
  • Viral Fusion Proteins