Hymenobacter radiodurans sp. nov., isolated from soil in the Republic of Korea

Arch Microbiol. 2021 Mar;203(2):655-661. doi: 10.1007/s00203-020-01895-y. Epub 2020 Oct 7.

Abstract

A bacterial strain, designated 17J36-26T, was isolated from the UV-irradiated soil from Jeju Island, South Korea. Cells are Gram negative, strictly aerobic, non-motile, non-spore forming, rod shaped, and catalase and oxidase positive. The major fatty acids of strain 17J36-26T were summed feature 4 (17:1 iso I/17:1 anteiso B), summed feature 3 (16:1 ω6c/16:1 ω7c), C16:1 ω5c and iso-C15:0. The polar lipid profile contained phosphatidylethanolamine, unidentified aminophospholipid, phospholipids and four unidentified lipids. The G+C content of the strain 17J36-26T was 62.6 mol%. The 16S rRNA gene sequence analysis showed that strain 17J36-26T was phylogenetically related to Hymenobacter qilianensis DK6-37T and Hymenobacter roseosalivarius AA718T (97.5% and 96.8% sequence similarity, respectively). Strain 17J36-26T showed resistance to UV radiation. Both average nucleotide identity (ANI) and in silico DNA-DNA hybridization (isDDH) values between strains 17J36-26T and type strains of Hymenobacter species were lower than the cut-off (≥ 95-96% for ANI and ≥ 70% for isDDH) to define a bacterial new species. The polyphasic approach using genotypic, phenotypic and chemotaxonomic data showed that strain 17J36-26T could be distinguished from its phylogenetically related species, and thus, the strain representative of a novel species within the genus Hymenobacter, for which the name Hymenobacter radiodurans sp. nov. (type strain 17J36-26T = KCTC 62269T = JCM 33185T) is proposed.

Keywords: Hymenobacer; Hymenobaceraceae; Novel species; UV irradiation.

MeSH terms

  • Bacteroidetes / classification
  • Bacteroidetes / genetics
  • Base Composition
  • Cytophagaceae / chemistry
  • Cytophagaceae / classification*
  • Cytophagaceae / genetics
  • Cytophagaceae / radiation effects
  • Fatty Acids / analysis
  • Phospholipids / analysis
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Republic of Korea
  • Soil Microbiology*
  • Species Specificity
  • Ultraviolet Rays

Substances

  • Fatty Acids
  • Phospholipids
  • RNA, Ribosomal, 16S

Supplementary concepts

  • Hymenobacter qilianensis
  • Hymenobacter roseosalivarius