An efficient KRAB domain for CRISPRi applications in human cells

Nat Methods. 2020 Nov;17(11):1093-1096. doi: 10.1038/s41592-020-0966-x. Epub 2020 Oct 5.

Abstract

Clustered regularly interspaced short palindromic repeat interference (CRISPRi), based on the fusion of inactive Cas9 (dCas9) to the Krüppel-associated box (KRAB) repressor, is a powerful platform for silencing gene expression. However, it suffers from incomplete silencing of target genes. We assayed 57 KRAB domains for their repressive potency and identified the ZIM3 KRAB domain as an exceptionally potent repressor. We establish that ZIM3 KRAB-dCas9 fusion silences gene expression more efficiently than existing platforms.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • CRISPR-Associated Protein 9 / genetics*
  • CRISPR-Cas Systems / genetics*
  • Catalytic Domain
  • Clustered Regularly Interspaced Short Palindromic Repeats*
  • Genes, Reporter
  • HEK293 Cells
  • Humans
  • K562 Cells
  • Kruppel-Like Transcription Factors / genetics*
  • Promoter Regions, Genetic
  • RNA, Guide, CRISPR-Cas Systems
  • Repressor Proteins / genetics
  • Transcription, Genetic

Substances

  • Kruppel-Like Transcription Factors
  • Repressor Proteins
  • CRISPR-Associated Protein 9

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