Andrographolide and its fluorescent derivative inhibit the main proteases of 2019-nCoV and SARS-CoV through covalent linkage

Biochem Biophys Res Commun. 2020 Dec 10;533(3):467-473. doi: 10.1016/j.bbrc.2020.08.086. Epub 2020 Aug 25.

Abstract

The coronavirus disease 2019 (COVID-19) pandemic caused by 2019 novel coronavirus (2019-nCoV) has been a crisis of global health, whereas the effective vaccines against 2019-nCoV are still under development. Alternatively, utilization of old drugs or available medicine that can suppress the viral activity or replication may provide an urgent solution to suppress the rapid spread of 2019-nCoV. Andrographolide is a highly abundant natural product of the medicinal plant, Andrographis paniculata, which has been clinically used for inflammatory diseases and anti-viral therapy. We herein demonstrate that both andrographolide and its fluorescent derivative, the nitrobenzoxadiazole-conjugated andrographolide (Andro- NBD), suppressed the main protease (Mpro) activities of 2019-nCoV and severe acute respiratory syndrome coronavirus (SARS-CoV). Moreover, Andro-NBD was shown to covalently link its fluorescence to these proteases. Further mass spectrometry (MS) analysis suggests that andrographolide formed a covalent bond with the active site Cys145 of either 2019-nCoV Mpro or SARS-CoV Mpro. Consistently, molecular modeling analysis supported the docking of andrographolide within the catalytic pockets of both viral Mpros. Considering that andrographolide is used in clinical practice with acceptable safety and its diverse pharmacological activities that could be beneficial for attenuating COVID-19 symptoms, extensive investigation of andrographolide on the suppression of 2019-nCoV as well as its application in COVID-19 therapy is suggested.

Keywords: 2019-nCoV; Andrographolide; Main protease; SARS-CoV.

MeSH terms

  • Betacoronavirus / enzymology
  • Catalytic Domain
  • Coronavirus 3C Proteases
  • Cysteine Endopeptidases / chemistry
  • Cysteine Endopeptidases / metabolism*
  • Diterpenes / chemistry
  • Diterpenes / pharmacology*
  • Fluorescent Dyes / chemistry
  • Fluorescent Dyes / pharmacology
  • Molecular Docking Simulation
  • Protease Inhibitors / chemistry*
  • Protease Inhibitors / pharmacology*
  • Protein Conformation
  • Protein Multimerization
  • SARS-CoV-2
  • Severe acute respiratory syndrome-related coronavirus / enzymology
  • Viral Nonstructural Proteins / antagonists & inhibitors*
  • Viral Nonstructural Proteins / chemistry
  • Viral Nonstructural Proteins / metabolism*

Substances

  • Diterpenes
  • Fluorescent Dyes
  • Protease Inhibitors
  • Viral Nonstructural Proteins
  • andrographolide
  • Cysteine Endopeptidases
  • Coronavirus 3C Proteases