A method for the quantitative detection of Cas12a ribonucleoproteins

Chem Commun (Camb). 2020 Oct 25;56(83):12616-12619. doi: 10.1039/d0cc04019c. Epub 2020 Sep 21.

Abstract

Cas12a ribonucleoprotein (RNP) is an RNA-guided CRISPR-associated nuclease used widely for genome editing and molecular diagnostics. Conventional detection methods rely on adopting antibody-based reagents that are expensive and lack scalability, and, moreover, only detect Cas12 enzyme rather than RNP, which is the true effector. Here, we describe a method for the rapid and quantitative detection of the effective Cas12a RNPs by the combined use of anti-CRISPR protein AcrVA1 and stem-loop RT-qPCR, achieving a limit of detection (LOD) of 1 fM in reaction buffer and 0.1 pM under biologically representative conditions.

MeSH terms

  • Bacterial Proteins / analysis*
  • Bacterial Proteins / metabolism
  • CRISPR-Associated Proteins / analysis*
  • CRISPR-Associated Proteins / metabolism
  • Endodeoxyribonucleases / analysis*
  • Endodeoxyribonucleases / metabolism
  • Endonucleases / metabolism
  • HEK293 Cells
  • Humans
  • Limit of Detection
  • RNA / metabolism
  • RNA, Double-Stranded / metabolism
  • RNA, Guide, CRISPR-Cas Systems / metabolism
  • Real-Time Polymerase Chain Reaction / methods*

Substances

  • Bacterial Proteins
  • CRISPR-Associated Proteins
  • RNA primers
  • RNA, Double-Stranded
  • RNA, Guide, CRISPR-Cas Systems
  • RNA
  • Cas12a protein
  • Endodeoxyribonucleases
  • Endonucleases