Supramolecular Mechanism of Viral Envelope Disruption by Molecular Tweezers

J Am Chem Soc. 2020 Oct 7;142(40):17024-17038. doi: 10.1021/jacs.0c06400. Epub 2020 Sep 28.

Abstract

Broad-spectrum antivirals are powerful weapons against dangerous viruses where no specific therapy exists, as in the case of the ongoing SARS-CoV-2 pandemic. We discovered that a lysine- and arginine-specific supramolecular ligand (CLR01) destroys enveloped viruses, including HIV, Ebola, and Zika virus, and remodels amyloid fibrils in semen that promote viral infection. Yet, it is unknown how CLR01 exerts these two distinct therapeutic activities. Here, we delineate a novel mechanism of antiviral activity by studying the activity of tweezer variants: the "phosphate tweezer" CLR01, a "carboxylate tweezer" CLR05, and a "phosphate clip" PC. Lysine complexation inside the tweezer cavity is needed to antagonize amyloidogenesis and is only achieved by CLR01. Importantly, CLR01 and CLR05 but not PC form closed inclusion complexes with lipid head groups of viral membranes, thereby altering lipid orientation and increasing surface tension. This process disrupts viral envelopes and diminishes infectivity but leaves cellular membranes intact. Consequently, CLR01 and CLR05 display broad antiviral activity against all enveloped viruses tested, including herpesviruses, Measles virus, influenza, and SARS-CoV-2. Based on our mechanistic insights, we potentiated the antiviral, membrane-disrupting activity of CLR01 by introducing aliphatic ester arms into each phosphate group to act as lipid anchors that promote membrane targeting. The most potent ester modifications harbored unbranched C4 units, which engendered tweezers that were approximately one order of magnitude more effective than CLR01 and nontoxic. Thus, we establish the mechanistic basis of viral envelope disruption by specific tweezers and establish a new class of potential broad-spectrum antivirals with enhanced activity.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acid Phosphatase / chemistry
  • Acid Phosphatase / metabolism
  • Amyloid / antagonists & inhibitors
  • Anti-HIV Agents / chemistry
  • Anti-HIV Agents / pharmacology
  • Antiviral Agents / chemistry*
  • Antiviral Agents / pharmacology*
  • Arginine / chemistry
  • Betacoronavirus / drug effects
  • Bridged-Ring Compounds / chemistry
  • Bridged-Ring Compounds / pharmacology*
  • Cell Membrane / chemistry
  • Cell Membrane / drug effects
  • Cell Membrane / virology
  • HIV Infections / drug therapy
  • HIV-1 / drug effects
  • Humans
  • Lipids / chemistry
  • Lysine / chemistry
  • Magnetic Resonance Spectroscopy
  • Organophosphates / chemistry
  • Organophosphates / pharmacology*
  • SARS-CoV-2
  • Seminal Vesicle Secretory Proteins / chemistry
  • Seminal Vesicle Secretory Proteins / metabolism
  • Structure-Activity Relationship
  • Viral Envelope Proteins / drug effects*
  • Viral Envelope Proteins / metabolism
  • Zika Virus / drug effects

Substances

  • Amyloid
  • Anti-HIV Agents
  • Antiviral Agents
  • Bridged-Ring Compounds
  • CLR01 compound
  • Lipids
  • Organophosphates
  • Seminal Vesicle Secretory Proteins
  • Viral Envelope Proteins
  • seminal vesicle-specific antigen
  • Arginine
  • Acid Phosphatase
  • prostatic acid phosphatase
  • Lysine