Comprehensive multiomics analysis reveals key roles of NACs in plant growth and development and its environmental adaption mechanism by regulating metabolite pathways

Genomics. 2020 Nov;112(6):4897-4911. doi: 10.1016/j.ygeno.2020.08.038. Epub 2020 Sep 9.

Abstract

Abnormal environmental conditions induce polyploidization and exacerbate vulnerability to agricultural production. Polyploidization is a pivotal event for plant adaption to stress and the expansion of transcription factors. NACs play key roles in plant stress resistance and growth and development, but the adaptive mechanism of NACs during plant polyploidization remain to be explored. Here, we identified and analyzed NACs from 15 species and found that the expansion of NACs was contributed by polyploidization. The regulatory networks were systematically analyzed based on polyomics. NACs might influence plant phenotypes and were correlated with amino acids acting as nitrogen source, indicating that NACs play a vital role in plant development. More importantly, in quinoa and Arabidopsis thaliana, NACs enabled plants to resist stress by regulating flavonoid pathways, and the universality was further confirmed by the Arabidopsis population. Our study provides a cornerstone for future research into improvement of important agronomic traits by transcription factors in a changing global environment.

Keywords: Amino acids; Environmental stress; Flavonoids; NACs; Polyploidization.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acclimatization / genetics*
  • Amino Acid Motifs
  • Arabidopsis / metabolism
  • Chenopodium quinoa / genetics
  • Chenopodium quinoa / metabolism
  • Evolution, Molecular
  • Flavonoids / metabolism
  • Gene Expression Regulation, Plant
  • Gene Regulatory Networks
  • Metabolic Networks and Pathways / genetics
  • Multigene Family
  • Mutation
  • Phylogeny
  • Plant Development / genetics*
  • Plant Proteins / chemistry
  • Plant Proteins / genetics*
  • Plant Proteins / metabolism
  • Plant Proteins / physiology*
  • Polyploidy
  • Protein Interaction Mapping
  • RNA-Seq
  • Stress, Physiological / genetics
  • Synteny
  • Transcription Factors / chemistry
  • Transcription Factors / genetics*
  • Transcription Factors / metabolism
  • Transcription Factors / physiology*

Substances

  • Flavonoids
  • Plant Proteins
  • Transcription Factors